Variant report

Variant	rs577435
Chromosome Location	chr11:71794681-71794682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:71794410-71794966	T-47D	breast:	n/a	n/a
2	POLR2A	chr11:71794240-71796396	K562	blood:	n/a	n/a
3	GATA3	chr11:71794401-71794886	T-47D	breast:	n/a	n/a
4	TAL1	chr11:71794564-71794821	K562	blood:	n/a	n/a
5	POLR2A	chr11:71794138-71795429	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71794597..71796676-chr11:71933862..71937757,3	K562	blood:
2	chr11:71743810..71760160-chr11:71777190..71805714,79	MCF-7	breast:
3	chr11:71748762..71757629-chr11:71789138..71799261,28	MCF-7	breast:
4	chr11:71791731..71794694-chr11:71822498..71824725,2	MCF-7	breast:
5	chr11:71789323..71798359-chr11:71810049..71815293,14	MCF-7	breast:

No data

Variant related genes	Relation type
NUMA1	TF binding region
LRTOMT	TF binding region
ENSG00000110200	Chromatin interaction
ENSG00000238768	Chromatin interaction
ENSG00000206783	Chromatin interaction
ENSG00000149357	Chromatin interaction
ENSG00000137497	Chromatin interaction
ENSG00000165458	Chromatin interaction

Extended variants
information (count: 165 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs10128658	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs10450664	0.87[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs10501408	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1055452	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs1057992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10736780	0.82[ASN][1000 genomes]
rs10736781	0.91[GIH][hapmap]
rs10736783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10751188	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10751189	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs10751191	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10751192	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10793011	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10793013	0.82[ASN][1000 genomes]
rs10793014	0.82[ASN][1000 genomes]
rs10793015	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10793016	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs10898812	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11235440	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs11235441	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11235444	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12272086	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12272213	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs12275171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12293195	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12293885	0.87[CEU][hapmap]
rs12417471	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1541304	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1541306	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs1548348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1573501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1573502	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs1573503	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17161751	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17161966	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs17161980	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs1892920	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1892921	0.87[CEU][hapmap]
rs1894004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1939242	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs1939243	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs1939247	0.87[CEU][hapmap]
rs2155142	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs2155145	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2155146	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2187496	0.86[CEU][hapmap];0.92[JPT][hapmap]
rs2250866	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs2276384	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2276396	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298456	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs2298457	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs2503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2508856	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2508860	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2511079	0.87[CEU][hapmap];0.81[GIH][hapmap];0.80[MEX][hapmap]
rs2511114	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs2511120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2735787	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2845860	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2852365	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2885880	0.83[JPT][hapmap]
rs3018301	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs3018302	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs3018310	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3750907	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3750908	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs3793938	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs3814721	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs3829215	0.92[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4121395	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs4245463	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4338555	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs4378421	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4387373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4412771	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4477459	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs482197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs493065	0.87[CEU][hapmap]
rs4943821	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs4944232	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[YRI][hapmap]
rs4944242	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs4944243	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4945378	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4945392	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4945426	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs4945434	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs510925	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs541022	0.87[CEU][hapmap];0.95[GIH][hapmap]
rs541228	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs542097	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap]
rs552966	0.87[CEU][hapmap]
rs560777	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs56255748	0.82[ASN][1000 genomes]
rs564294	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs567026	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs575831	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs575871	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs579320	0.86[CEU][hapmap]
rs58417942	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs585228	0.86[CEU][hapmap]
rs595062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60054591	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs607446	0.87[CEU][hapmap]
rs610004	0.87[CEU][hapmap]
rs610041	0.87[CEU][hapmap]
rs612255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs628025	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642573	0.87[CEU][hapmap]
rs642618	0.87[CEU][hapmap]
rs645603	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592447	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.93[YRI][hapmap];0.82[ASN][1000 genomes]
rs6592448	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs6592449	0.87[CEU][hapmap]
rs6592450	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs6592451	1.00[CEU][hapmap];0.91[GIH][hapmap]
rs6592453	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs6592455	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs6592456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs659513	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs661290	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs671132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671681	0.87[CEU][hapmap]
rs673478	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs674319	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs679926	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs686340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101553	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7102192	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7102523	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7103210	0.86[CEU][hapmap]
rs7106653	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7106730	1.00[CEU][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7111379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7113436	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7113520	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7113549	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7115513	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7121080	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7121260	0.87[CEU][hapmap];0.82[GIH][hapmap]
rs7123992	0.82[CEU][hapmap]
rs7126394	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7127865	0.87[CEU][hapmap]
rs7128317	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7128974	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs73531955	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73543612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73543635	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73543640	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73543643	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924834	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[ASN][1000 genomes]
rs7925411	0.85[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs7925604	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7930142	0.92[YRI][hapmap]
rs7930544	0.86[CEU][hapmap]
rs7931941	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7937515	0.85[JPT][hapmap]
rs7942626	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7948821	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs947932	0.87[CEU][hapmap]
rs949323	1.00[CEU][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap]
rs949326	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9666346	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs577435	CKMT2	trans	brain	seeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71792400-71796200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:71792400-71797000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:71792400-71798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:71792400-71799000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:71792400-71799000	Weak transcription	Left Ventricle	heart
6	chr11:71792400-71799200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:71792400-71799400	Weak transcription	Ovary	ovary
8	chr11:71792400-71802600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:71792400-71805200	Weak transcription	HSMMtube	muscle
10	chr11:71792400-71805800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:71792600-71796200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:71792600-71796200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:71792600-71796200	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:71792600-71796200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:71792600-71796200	Weak transcription	Fetal Brain Female	brain
16	chr11:71792600-71796600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:71792600-71796600	Weak transcription	Brain Germinal Matrix	brain
18	chr11:71792600-71796800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:71792600-71796800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:71792600-71796800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:71792600-71796800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:71792600-71796800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:71792600-71797200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:71792600-71797200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:71792600-71799000	Weak transcription	Liver	Liver
26	chr11:71792600-71799200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:71792600-71799200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:71792600-71799200	Weak transcription	Osteobl	bone
29	chr11:71792600-71799400	Weak transcription	HSMM	muscle
30	chr11:71792600-71800800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:71792600-71802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:71792600-71802400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:71792600-71804200	Weak transcription	Aorta	Aorta
34	chr11:71792600-71804800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:71792600-71805400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr11:71792600-71805400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:71792600-71805400	Weak transcription	Colonic Mucosa	Colon
38	chr11:71792600-71805600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:71792600-71805600	Weak transcription	Esophagus	oesophagus
40	chr11:71792600-71805600	Weak transcription	Pancreas	Pancrea
41	chr11:71792600-71808800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:71792600-71809000	Weak transcription	Psoas Muscle	Psoas
43	chr11:71792600-71812800	Weak transcription	Fetal Heart	heart
44	chr11:71792600-71813200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr11:71792800-71795000	Enhancers	Placenta	Placenta
46	chr11:71792800-71796000	Weak transcription	Brain Angular Gyrus	brain
47	chr11:71792800-71796000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:71792800-71796000	Weak transcription	NHLF	lung
49	chr11:71792800-71796200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr11:71792800-71796200	Weak transcription	Brain Inferior Temporal Lobe	brain

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