Variant report

Variant	rs1894004
Chromosome Location	chr11:71759817-71759818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:71759726-71760530	T-47D	breast:	n/a	n/a
2	ESR1	chr11:71759809-71760437	T-47D	breast:	n/a	n/a
3	FOXA1	chr11:71759741-71760438	T-47D	breast:	n/a	n/a
4	POLR2A	chr11:71759767-71760084	HUVEC	blood vessel:	n/a	n/a
5	FOXA1	chr11:71759718-71760219	HepG2	liver:	n/a	n/a
6	GATA3	chr11:71759711-71760564	T-47D	breast:	n/a	n/a
7	FOXA1	chr11:71759781-71760459	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71743810..71760160-chr11:71777190..71805714,79	MCF-7	breast:

Variant related genes	Relation type
RNU6-292P	TF binding region
ENSG00000184154	Chromatin interaction
ENSG00000137497	Chromatin interaction
ENSG00000263742	Chromatin interaction
ENSG00000212089	Chromatin interaction

Extended variants
information (count: 179 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:177)

rs_ID	r²[population]
rs10128658	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs10450664	0.87[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs10501408	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1055452	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs1057992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10736780	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10736781	0.91[GIH][hapmap]
rs10736783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10751188	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10751189	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs10751191	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10751192	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793011	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793013	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793014	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793015	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793016	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs10898812	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11235440	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs11235441	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235444	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12272086	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12272213	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs12275171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12293195	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12293885	0.87[CEU][hapmap]
rs12417471	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1541304	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1541306	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs1548348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1573501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1573502	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs1573503	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17161751	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17161966	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs17161980	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs1791456	0.80[ASN][1000 genomes]
rs1892920	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1892921	0.87[CEU][hapmap]
rs1939242	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs1939243	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs1939247	0.87[CEU][hapmap]
rs2155142	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2155145	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155146	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2187496	0.86[CEU][hapmap];0.92[JPT][hapmap]
rs2250866	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs2276384	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2276396	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2298456	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs2298457	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs2503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2508856	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2508860	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2511079	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs2511114	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs2511120	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2735787	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2845860	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2852365	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2885880	0.83[JPT][hapmap]
rs3018301	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs3018302	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs3018310	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3750907	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3750908	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs3793938	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs3814721	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs3829215	0.92[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.84[MKK][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4121395	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs4245463	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4269951	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4338555	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs4378421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4387373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4399349	0.89[ASN][1000 genomes]
rs4412771	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4477459	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs482197	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs488829	0.80[ASN][1000 genomes]
rs492135	0.81[ASN][1000 genomes]
rs493065	0.87[CEU][hapmap]
rs4943821	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs4944232	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.81[YRI][hapmap]
rs4944242	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs4944243	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945378	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945382	0.84[ASN][1000 genomes]
rs4945391	0.81[ASN][1000 genomes]
rs4945392	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945426	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs4945434	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs497761	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs510925	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes]
rs518959	0.80[ASN][1000 genomes]
rs541022	0.87[CEU][hapmap];0.95[GIH][hapmap]
rs541228	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs542097	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs552966	0.87[CEU][hapmap]
rs560777	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs56255748	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs564294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs567026	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs567851	0.80[ASN][1000 genomes]
rs575831	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs575871	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs577435	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs579320	0.86[CEU][hapmap]
rs58417942	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs585228	0.86[CEU][hapmap]
rs595062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60054591	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs607446	0.87[CEU][hapmap]
rs610004	0.87[CEU][hapmap]
rs610041	0.87[CEU][hapmap]
rs612255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs628025	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs642573	0.87[CEU][hapmap]
rs642618	0.87[CEU][hapmap]
rs645603	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592447	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592448	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs6592449	0.87[CEU][hapmap]
rs6592450	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs6592451	1.00[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs6592453	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs6592455	0.87[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap]
rs6592456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs659513	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs661290	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs671132	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs671681	0.87[CEU][hapmap]
rs673478	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs674319	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs674735	0.87[CEU][hapmap]
rs679926	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs686340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7101553	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7102192	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7102523	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7103210	0.86[CEU][hapmap]
rs7106653	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7106730	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs7111379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7113436	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7113520	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7113549	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7115513	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7121080	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7121260	0.87[CEU][hapmap];0.82[GIH][hapmap]
rs7123992	0.82[CEU][hapmap]
rs7126394	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7127865	0.87[CEU][hapmap]
rs7128317	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7128974	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs73531955	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73543612	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73543635	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73543640	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73543643	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7924834	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7925411	0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs7925604	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7930142	0.92[YRI][hapmap]
rs7930544	0.86[CEU][hapmap]
rs7931941	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs7937515	0.85[JPT][hapmap]
rs7938496	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7942626	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7948821	0.87[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs7951564	0.87[ASN][1000 genomes]
rs947932	0.87[CEU][hapmap]
rs949323	1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs949326	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9666346	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735988	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1894004	NUMA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71753200-71772800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:71753200-71773000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:71753400-71765800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:71753400-71769800	Weak transcription	Psoas Muscle	Psoas
5	chr11:71753800-71760000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:71753800-71760200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:71753800-71764600	Weak transcription	HSMM	muscle
8	chr11:71754000-71760000	Weak transcription	Right Atrium	heart
9	chr11:71754000-71767200	Weak transcription	Small Intestine	intestine
10	chr11:71754000-71769600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:71754000-71769600	Weak transcription	NH-A	brain
12	chr11:71754000-71769600	Weak transcription	NHLF	lung
13	chr11:71754000-71769600	Weak transcription	Osteobl	bone
14	chr11:71754000-71771400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:71754000-71772000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:71754200-71760000	Weak transcription	Spleen	Spleen
17	chr11:71754200-71760000	Weak transcription	A549	lung
18	chr11:71754200-71769400	Weak transcription	HMEC	breast
19	chr11:71754200-71769400	Weak transcription	NHDF-Ad	bronchial
20	chr11:71754200-71769400	Weak transcription	NHEK	skin
21	chr11:71754200-71769600	Weak transcription	HSMMtube	muscle
22	chr11:71754200-71771000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:71754200-71772800	Weak transcription	Lung	lung
24	chr11:71754200-71777400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:71754200-71777600	Weak transcription	Brain Germinal Matrix	brain
26	chr11:71754200-71777600	Weak transcription	Colonic Mucosa	Colon
27	chr11:71754200-71777800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:71754200-71780200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:71754200-71780400	Weak transcription	Aorta	Aorta
30	chr11:71754200-71789600	Weak transcription	Fetal Brain Female	brain
31	chr11:71754400-71761600	Weak transcription	Fetal Heart	heart
32	chr11:71754800-71781000	Weak transcription	Fetal Intestine Large	intestine
33	chr11:71755000-71780800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr11:71755200-71780400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:71755400-71765400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:71755400-71783000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:71755800-71778000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr11:71756000-71760600	Strong transcription	Thymus	Thymus
39	chr11:71756000-71762200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:71756000-71767400	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr11:71756200-71760600	Enhancers	Adipose Nuclei	Adipose
42	chr11:71756200-71763600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:71756200-71768200	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr11:71756200-71783200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:71756400-71760400	Strong transcription	Fetal Thymus	thymus
46	chr11:71756400-71761400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:71756400-71762600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:71756400-71764000	Strong transcription	Hela-S3	cervix
49	chr11:71756400-71768000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr11:71756600-71770600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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