Variant report

Variant	rs6592450
Chromosome Location	chr11:71671166-71671167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71638912..71641709-chr11:71669595..71671900,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137522	Chromatin interaction
ENSG00000254469	Chromatin interaction

Extended variants
information (count: 218 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:216)

rs_ID	r²[population]
rs10128658	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10450664	0.87[GIH][hapmap]
rs10501408	0.87[CEU][hapmap];0.85[GIH][hapmap]
rs1055452	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs1057992	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs10736781	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736782	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736783	0.82[CEU][hapmap]
rs10736786	0.83[EUR][1000 genomes]
rs10751189	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751190	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751191	0.86[CEU][hapmap]
rs10793011	0.87[CEU][hapmap]
rs10793016	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10898814	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898817	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11235440	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs11235441	0.87[CEU][hapmap]
rs12272213	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12293195	0.87[CEU][hapmap]
rs12293885	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1541304	0.87[CEU][hapmap]
rs1541306	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1548348	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs1573500	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1573501	0.87[CEU][hapmap]
rs1573502	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1612492	0.81[EUR][1000 genomes]
rs1629046	0.83[EUR][1000 genomes]
rs1629722	0.81[EUR][1000 genomes]
rs17161966	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs17161980	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs1783959	0.83[EUR][1000 genomes]
rs1783960	0.81[EUR][1000 genomes]
rs1783961	0.81[EUR][1000 genomes]
rs1783962	0.81[EUR][1000 genomes]
rs1791449	0.81[EUR][1000 genomes]
rs1791450	0.81[EUR][1000 genomes]
rs1791452	0.81[EUR][1000 genomes]
rs1892919	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1892920	0.87[CEU][hapmap]
rs1892921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1894003	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1894004	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs1939242	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1939243	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1939245	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1939247	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2155142	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs2187496	1.00[CEU][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2250866	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.92[TSI][hapmap]
rs2276384	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs2298456	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2298457	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap]
rs2363736	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460254	0.81[EUR][1000 genomes]
rs2503	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs2508856	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs2511079	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs2511099	0.81[EUR][1000 genomes]
rs2511114	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs2845856	0.81[EUR][1000 genomes]
rs2845857	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2885880	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3016291	0.81[EUR][1000 genomes]
rs3018301	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs3018302	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs3018310	0.82[CEU][hapmap]
rs3750908	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs3793938	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs3814721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3829215	0.83[GIH][hapmap]
rs3886589	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4338555	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4387373	0.87[CEU][hapmap]
rs4479013	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4491255	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs474231	0.86[EUR][1000 genomes]
rs475959	0.83[EUR][1000 genomes]
rs479487	0.81[EUR][1000 genomes]
rs481300	0.81[EUR][1000 genomes]
rs481355	0.81[EUR][1000 genomes]
rs493065	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4943821	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs4944232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944243	0.87[CEU][hapmap]
rs4944258	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4944259	0.84[ASN][1000 genomes]
rs4945340	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4945353	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945378	0.87[CEU][hapmap]
rs4945392	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs4945426	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945434	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4945435	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs495567	0.81[EUR][1000 genomes]
rs497761	0.87[CEU][hapmap]
rs499386	0.83[EUR][1000 genomes]
rs506395	0.81[EUR][1000 genomes]
rs510925	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs513292	0.81[EUR][1000 genomes]
rs514431	0.86[EUR][1000 genomes]
rs519098	0.86[EUR][1000 genomes]
rs529522	0.83[EUR][1000 genomes]
rs529567	0.81[EUR][1000 genomes]
rs531326	0.81[EUR][1000 genomes]
rs532433	0.81[EUR][1000 genomes]
rs541022	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap]
rs542097	0.87[CEU][hapmap]
rs548127	0.81[EUR][1000 genomes]
rs550230	0.86[EUR][1000 genomes]
rs552966	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs556089	0.81[EUR][1000 genomes]
rs558859	0.86[EUR][1000 genomes]
rs55972015	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560777	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap]
rs56097487	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs562414	0.81[EUR][1000 genomes]
rs562469	0.81[EUR][1000 genomes]
rs562621	0.81[EUR][1000 genomes]
rs566965	0.81[EUR][1000 genomes]
rs567026	0.87[CEU][hapmap];0.86[GIH][hapmap]
rs573227	0.81[EUR][1000 genomes]
rs575831	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs575871	0.87[CEU][hapmap]
rs577435	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs579320	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs585228	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs595062	0.87[CEU][hapmap]
rs596130	0.83[EUR][1000 genomes]
rs599611	0.81[EUR][1000 genomes]
rs607319	0.81[EUR][1000 genomes]
rs607446	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs610004	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs610041	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs612255	0.86[CEU][hapmap]
rs613140	0.81[EUR][1000 genomes]
rs613535	0.81[EUR][1000 genomes]
rs613971	0.81[EUR][1000 genomes]
rs615000	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs618186	0.84[EUR][1000 genomes]
rs629714	0.81[EUR][1000 genomes]
rs642573	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs642618	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs654780	0.81[EUR][1000 genomes]
rs656990	0.81[EUR][1000 genomes]
rs657819	0.81[EUR][1000 genomes]
rs658699	0.81[EUR][1000 genomes]
rs6592447	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs6592448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592452	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592456	0.87[CEU][hapmap]
rs6592457	0.87[CEU][hapmap]
rs6592458	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs659513	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs661242	0.83[EUR][1000 genomes]
rs661290	0.87[CEU][hapmap]
rs662649	0.81[EUR][1000 genomes]
rs671681	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs673478	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs674688	0.81[EUR][1000 genomes]
rs674735	1.00[CEU][hapmap]
rs679926	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap]
rs680150	0.83[EUR][1000 genomes]
rs686205	0.81[EUR][1000 genomes]
rs686340	0.87[CEU][hapmap]
rs693648	0.81[EUR][1000 genomes]
rs7101701	0.83[EUR][1000 genomes]
rs7102192	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106730	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs7106748	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111379	0.87[CEU][hapmap]
rs7113436	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs7113549	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs7115513	0.87[CEU][hapmap]
rs7116495	0.83[EUR][1000 genomes]
rs7121080	0.87[CEU][hapmap]
rs7121260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7123992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7124000	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7126394	0.87[CEU][hapmap]
rs7127865	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7128317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7128346	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73531952	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7480015	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7924516	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924834	0.87[CEU][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap]
rs7925411	0.87[GIH][hapmap]
rs7925604	0.87[CEU][hapmap]
rs7925901	0.90[ASN][1000 genomes]
rs7926533	0.81[EUR][1000 genomes]
rs7930142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7930544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7930721	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7930722	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7931941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937515	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs7937582	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7943227	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944073	0.81[EUR][1000 genomes]
rs7948821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949480	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951194	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs947932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949323	0.87[CEU][hapmap];0.91[GIH][hapmap]
rs949325	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs949326	0.87[CEU][hapmap];0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6592450	NUMA1	cis	uninvolved skin	skin_eQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71641200-71671400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:71641400-71671400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:71641600-71671400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:71641600-71671600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:71641600-71671600	Weak transcription	Brain Germinal Matrix	brain
6	chr11:71641600-71671600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:71641600-71673400	Weak transcription	NHLF	lung
8	chr11:71641800-71671600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:71642600-71671200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:71642800-71671200	Weak transcription	Dnd41	blood
11	chr11:71642800-71671400	Weak transcription	Fetal Brain Female	brain
12	chr11:71645600-71671200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:71645800-71671400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr11:71648800-71671600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:71652000-71671200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:71652200-71671200	Weak transcription	Aorta	Aorta
17	chr11:71654200-71671200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:71657800-71671200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:71658800-71677800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:71659000-71671200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:71659200-71671600	Weak transcription	NHEK	skin
22	chr11:71659600-71671200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:71659800-71671200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:71659800-71671600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:71659800-71671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:71660000-71671400	Weak transcription	Fetal Lung	lung
27	chr11:71660000-71671400	Weak transcription	HSMM	muscle
28	chr11:71660000-71671400	Weak transcription	Osteobl	bone
29	chr11:71660000-71671800	Weak transcription	NH-A	brain
30	chr11:71660000-71672800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:71660200-71671200	Weak transcription	Fetal Kidney	kidney
32	chr11:71660200-71671600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:71660200-71671600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:71660400-71671600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:71660400-71701200	Weak transcription	Gastric	stomach
36	chr11:71660600-71671400	Weak transcription	Colonic Mucosa	Colon
37	chr11:71660600-71671600	Weak transcription	Fetal Heart	heart
38	chr11:71660600-71671600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:71660800-71671200	Weak transcription	Hela-S3	cervix
40	chr11:71660800-71671600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:71660800-71709400	Weak transcription	Stomach Mucosa	stomach
42	chr11:71661000-71671400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:71661000-71671600	Weak transcription	Lung	lung
44	chr11:71661000-71709600	Weak transcription	Small Intestine	intestine
45	chr11:71661200-71671400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:71661400-71671200	Weak transcription	Liver	Liver
47	chr11:71661400-71671400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:71661400-71687600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:71661600-71671600	Weak transcription	Pancreas	Pancrea
50	chr11:71663000-71689400	Weak transcription	Brain Cingulate Gyrus	brain

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