Variant report

Variant	rs7937515
Chromosome Location	chr11:71841325-71841326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71814278..71816479-chr11:71839880..71841966,3	MCF-7	breast:
2	chr11:71831890..71834661-chr11:71839511..71841766,2	K562	blood:
3	chr11:71822104..71825137-chr11:71839409..71842719,3	K562	blood:
4	chr11:71841111..71843953-chr11:71844443..71847112,3	K562	blood:
5	chr11:71839501..71841685-chr11:71843500..71845444,2	MCF-7	breast:
6	chr11:71831890..71834661-chr11:71839179..71841766,3	K562	blood:

Variant related genes	Relation type
ENSG00000110203	Chromatin interaction
ENSG00000238768	Chromatin interaction
ENSG00000110200	Chromatin interaction
ENSG00000149357	Chromatin interaction

Extended variants
information (count: 159 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10128658	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs10501408	0.85[JPT][hapmap]
rs1055452	0.93[JPT][hapmap]
rs1057992	0.85[JPT][hapmap]
rs10736781	0.85[JPT][hapmap];0.84[YRI][hapmap]
rs10736783	0.85[JPT][hapmap]
rs10736786	0.85[ASN][1000 genomes]
rs10751189	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs10751191	0.87[JPT][hapmap]
rs10751193	0.85[ASN][1000 genomes]
rs10793011	0.87[JPT][hapmap]
rs10793016	0.81[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs11235440	0.81[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11235441	0.81[JPT][hapmap]
rs12272213	0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs12283462	0.89[ASN][1000 genomes]
rs12293885	0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1541304	0.87[JPT][hapmap]
rs1541306	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1548348	0.85[JPT][hapmap]
rs1573501	0.87[JPT][hapmap]
rs1573502	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs17161966	0.81[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs17161980	0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs17161991	0.89[ASN][1000 genomes]
rs1791544	0.85[ASN][1000 genomes]
rs1806778	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1892920	0.86[JPT][hapmap]
rs1892921	0.93[JPT][hapmap]
rs1894004	0.85[JPT][hapmap]
rs1939242	0.81[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1939243	0.93[JPT][hapmap]
rs1939247	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs2155142	0.85[JPT][hapmap]
rs2155145	0.86[JPT][hapmap]
rs2187496	0.81[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap]
rs2250866	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs2276384	0.85[JPT][hapmap]
rs2298456	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs2298457	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs2503	0.85[JPT][hapmap]
rs2508856	0.85[JPT][hapmap]
rs2511074	0.85[ASN][1000 genomes]
rs2511075	0.83[ASN][1000 genomes]
rs2511078	0.85[ASN][1000 genomes]
rs2511079	0.81[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2511114	0.81[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2511116	0.86[ASN][1000 genomes]
rs2511121	0.87[AFR][1000 genomes]
rs2511122	0.85[ASN][1000 genomes]
rs28504107	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2885880	0.86[JPT][hapmap]
rs3018301	0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3018302	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs3018304	0.83[ASN][1000 genomes]
rs3018308	0.83[ASN][1000 genomes]
rs3018310	0.85[JPT][hapmap]
rs3133230	0.85[ASN][1000 genomes]
rs3133233	0.85[ASN][1000 genomes]
rs3750908	0.81[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs3793938	0.81[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs3814721	0.93[JPT][hapmap]
rs4121395	0.93[JPT][hapmap]
rs4338555	0.81[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4387373	0.87[JPT][hapmap]
rs4477459	0.87[JPT][hapmap]
rs482013	0.85[ASN][1000 genomes]
rs493065	0.81[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs4943821	0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4944232	0.93[JPT][hapmap]
rs4944242	0.93[JPT][hapmap]
rs4944243	0.87[JPT][hapmap]
rs4945378	0.87[JPT][hapmap]
rs4945392	0.85[JPT][hapmap]
rs4945426	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs4945434	0.81[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4945435	0.82[ASN][1000 genomes]
rs495567	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs510925	0.81[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs517837	0.86[ASN][1000 genomes]
rs541022	0.81[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs542752	0.87[ASN][1000 genomes]
rs548961	0.85[ASN][1000 genomes]
rs552966	0.81[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap];0.85[ASN][1000 genomes]
rs560777	0.81[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs567026	0.85[JPT][hapmap]
rs57025151	0.85[ASN][1000 genomes]
rs575831	0.85[JPT][hapmap]
rs575871	0.85[JPT][hapmap]
rs577435	0.85[JPT][hapmap]
rs579320	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs585228	0.81[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs58991229	0.86[ASN][1000 genomes]
rs595062	0.87[JPT][hapmap]
rs597513	0.86[ASN][1000 genomes]
rs598835	0.86[ASN][1000 genomes]
rs607446	0.81[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs610004	0.81[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs610041	0.81[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs612255	0.87[JPT][hapmap]
rs615000	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs627329	0.86[ASN][1000 genomes]
rs636946	0.85[ASN][1000 genomes]
rs642573	0.81[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs642618	0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs656640	0.83[ASN][1000 genomes]
rs6592448	0.93[JPT][hapmap]
rs6592449	0.93[JPT][hapmap]
rs6592450	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs6592451	0.93[JPT][hapmap]
rs6592453	0.93[JPT][hapmap]
rs6592455	0.93[JPT][hapmap]
rs6592456	0.87[JPT][hapmap]
rs6592457	0.80[JPT][hapmap]
rs6592458	0.82[ASN][1000 genomes]
rs6592459	0.84[ASN][1000 genomes]
rs659513	0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs661290	0.87[JPT][hapmap]
rs670802	0.86[ASN][1000 genomes]
rs671681	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs673478	0.81[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs675185	0.83[ASN][1000 genomes]
rs676721	0.85[ASN][1000 genomes]
rs677279	0.85[ASN][1000 genomes]
rs678193	0.85[ASN][1000 genomes]
rs679926	0.81[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs686340	0.86[JPT][hapmap]
rs7101701	0.85[ASN][1000 genomes]
rs7103210	0.93[JPT][hapmap]
rs7106730	0.93[JPT][hapmap]
rs7111379	0.81[JPT][hapmap]
rs7113436	0.85[JPT][hapmap]
rs7113549	0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7115513	0.87[JPT][hapmap]
rs7116188	0.89[ASN][1000 genomes]
rs7116495	0.85[ASN][1000 genomes]
rs7121080	0.87[JPT][hapmap]
rs7121260	0.93[JPT][hapmap]
rs7123102	0.89[ASN][1000 genomes]
rs7123992	0.93[JPT][hapmap];0.84[YRI][hapmap]
rs7124000	0.82[ASN][1000 genomes]
rs7126394	0.87[JPT][hapmap]
rs7126838	0.89[ASN][1000 genomes]
rs7127865	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs7128317	0.93[JPT][hapmap]
rs7128974	0.93[JPT][hapmap]
rs73539529	0.88[ASN][1000 genomes]
rs73539532	0.89[ASN][1000 genomes]
rs73543609	0.89[ASN][1000 genomes]
rs73543633	0.89[ASN][1000 genomes]
rs7924834	0.93[JPT][hapmap]
rs7925411	0.85[JPT][hapmap]
rs7930142	0.92[JPT][hapmap]
rs7930544	0.93[JPT][hapmap]
rs7931941	0.93[JPT][hapmap];0.84[YRI][hapmap]
rs7948821	0.93[JPT][hapmap]
rs947932	0.93[JPT][hapmap]
rs949323	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7937515	FOLR3	cis	Whole Blood	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71828400-71850800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:71834400-71851000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:71836000-71847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:71836800-71847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:71839600-71843600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:71839800-71846600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:71840800-71842400	Enhancers	Monocytes-CD14+_RO01746	blood

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