Variant report

Variant	rs1892921
Chromosome Location	chr11:71702138-71702139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:71701962-71702138	HUVEC	blood vessel:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71639752..71641545-chr11:71700204..71703182,2	MCF-7	breast:
2	chr11:71701372..71704130-chr11:71713984..71716251,2	K562	blood:
3	chr11:71696643..71698574-chr11:71700345..71702510,2	MCF-7	breast:
4	chr11:71700377..71703102-chr11:71705568..71707069,2	K562	blood:
5	chr11:71700377..71703208-chr11:71704361..71707069,2	K562	blood:
6	chr11:71692780..71694437-chr11:71700884..71703038,2	MCF-7	breast:

No data

Variant related genes	Relation type
RNF121	TF binding region
ENSG00000137522	Chromatin interaction

Extended variants
information (count: 206 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:204)

rs_ID	r²[population]
rs10128658	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10501408	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs1055452	0.87[CEU][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap]
rs1057992	0.87[CEU][hapmap]
rs10736781	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10736782	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10736783	0.82[CEU][hapmap];0.86[YRI][hapmap]
rs10736786	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10751189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751190	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751191	0.87[CEU][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap]
rs10751193	0.85[EUR][1000 genomes]
rs10793011	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs10793016	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898814	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898817	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235440	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs11235441	0.87[CEU][hapmap]
rs12272213	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs12293195	0.87[CEU][hapmap]
rs12293885	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs1541304	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs1541306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548348	0.87[CEU][hapmap]
rs1573500	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1573501	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs1573502	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1629046	0.80[EUR][1000 genomes]
rs17161966	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs17161980	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs1783959	0.81[EUR][1000 genomes]
rs1791544	0.81[EUR][1000 genomes]
rs1892919	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1892920	0.87[CEU][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap]
rs1894003	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1894004	0.87[CEU][hapmap]
rs1939242	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1939243	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1939245	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1939247	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2155142	0.87[CEU][hapmap]
rs2155145	0.81[JPT][hapmap]
rs2187496	1.00[CEU][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs2250866	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs2276384	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs2298456	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298457	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2363736	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2503	0.87[CEU][hapmap]
rs2508578	0.80[EUR][1000 genomes]
rs2508856	0.87[CEU][hapmap]
rs2511074	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2511075	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2511078	0.85[EUR][1000 genomes]
rs2511079	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs2511114	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs2511116	0.85[EUR][1000 genomes]
rs2845857	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2885880	0.81[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3018301	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs3018302	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs3018308	0.80[ASN][1000 genomes]
rs3018310	0.82[CEU][hapmap]
rs3133230	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3133233	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3750908	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs3793938	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs3814721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3886589	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4121395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4338555	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4387373	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs4477459	0.81[JPT][hapmap]
rs4479013	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4491255	0.94[ASN][1000 genomes]
rs474231	0.83[EUR][1000 genomes]
rs475959	0.80[EUR][1000 genomes]
rs482013	0.85[EUR][1000 genomes]
rs493065	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes]
rs4943821	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs4944232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944243	0.87[CEU][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap]
rs4944258	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944259	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4945340	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4945353	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945378	0.87[CEU][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap]
rs4945392	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs4945426	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945434	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945435	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs495567	0.83[EUR][1000 genomes]
rs497761	0.87[CEU][hapmap]
rs499386	0.80[EUR][1000 genomes]
rs510925	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs514431	0.83[EUR][1000 genomes]
rs517837	0.85[EUR][1000 genomes]
rs519098	0.83[EUR][1000 genomes]
rs529522	0.80[EUR][1000 genomes]
rs541022	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs542097	0.87[CEU][hapmap]
rs542752	0.85[EUR][1000 genomes]
rs548961	0.83[EUR][1000 genomes]
rs550230	0.83[EUR][1000 genomes]
rs552966	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs558859	0.83[EUR][1000 genomes]
rs55972015	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs560777	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56097487	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs567026	0.87[CEU][hapmap]
rs57025151	0.83[EUR][1000 genomes]
rs575831	0.87[CEU][hapmap]
rs575871	0.87[CEU][hapmap]
rs577435	0.87[CEU][hapmap]
rs579320	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs585228	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs595062	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs596130	0.81[EUR][1000 genomes]
rs597513	0.85[EUR][1000 genomes]
rs598835	0.85[EUR][1000 genomes]
rs601865	0.80[EUR][1000 genomes]
rs607446	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes]
rs610004	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes]
rs610041	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes]
rs612255	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs615000	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs618186	0.81[EUR][1000 genomes]
rs627329	0.85[EUR][1000 genomes]
rs636946	0.85[EUR][1000 genomes]
rs642573	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs642618	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs656640	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6592447	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs6592448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592452	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592456	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs6592457	0.87[CEU][hapmap]
rs6592458	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs659513	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs661242	0.81[EUR][1000 genomes]
rs661290	0.87[CEU][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap]
rs670802	0.85[EUR][1000 genomes]
rs671681	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs673478	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs674735	1.00[CEU][hapmap]
rs675185	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs676721	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs677279	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs678193	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs679926	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs680150	0.81[EUR][1000 genomes]
rs686340	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs7101701	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7102192	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7103210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106730	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs7106748	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7111379	0.87[CEU][hapmap]
rs7113436	0.87[CEU][hapmap];0.81[YRI][hapmap]
rs7113549	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7115513	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs7116495	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7121080	0.87[CEU][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap]
rs7121260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7124000	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7126394	0.87[CEU][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap]
rs7126838	0.81[EUR][1000 genomes]
rs7127865	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7128317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128346	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7128974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73531952	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73539529	0.85[EUR][1000 genomes]
rs73539532	0.81[EUR][1000 genomes]
rs73543609	0.85[EUR][1000 genomes]
rs73543633	0.81[EUR][1000 genomes]
rs7480015	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7924516	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7924834	0.87[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs7925411	0.82[YRI][hapmap]
rs7925604	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs7925901	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7930142	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7930544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7930721	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7930722	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7931941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7937515	0.93[JPT][hapmap]
rs7937582	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7943227	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7948821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7949480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7951194	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs947932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs949323	0.87[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs949325	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs949326	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1892921	NUMA1	Cis_1M	lymphoblastoid	RTeQTL
rs1892921	NUMA1	cis	uninvolved skin	skin_eQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71660800-71709400	Weak transcription	Stomach Mucosa	stomach
2	chr11:71661000-71709600	Weak transcription	Small Intestine	intestine
3	chr11:71672200-71715200	Weak transcription	Fetal Brain Male	brain
4	chr11:71672400-71709400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:71672600-71709200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:71673600-71710800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:71673800-71707800	Weak transcription	Fetal Heart	heart
8	chr11:71674000-71710600	Weak transcription	Brain Germinal Matrix	brain
9	chr11:71677000-71709400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:71677200-71736600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:71678000-71710600	Weak transcription	HMEC	breast
12	chr11:71681200-71709400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:71684200-71709000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:71687800-71703000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:71688600-71703200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:71689000-71711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:71689600-71702400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:71691400-71705800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:71693400-71702200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:71695200-71705800	Weak transcription	Lung	lung
21	chr11:71695200-71706400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:71695200-71709400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:71695200-71709400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:71695200-71710600	Weak transcription	Esophagus	oesophagus
25	chr11:71695400-71707600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:71695400-71709800	Weak transcription	Dnd41	blood
27	chr11:71695400-71712200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:71695400-71713000	Weak transcription	Psoas Muscle	Psoas
29	chr11:71698600-71708800	Strong transcription	A549	lung
30	chr11:71699200-71702200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:71699400-71706400	Weak transcription	Right Ventricle	heart
32	chr11:71699400-71707800	Weak transcription	Hela-S3	cervix
33	chr11:71699400-71710200	Weak transcription	NHDF-Ad	bronchial
34	chr11:71699600-71706200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:71699600-71706400	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:71699600-71706400	Weak transcription	Ovary	ovary
37	chr11:71699600-71707800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:71699600-71710000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:71699600-71710000	Weak transcription	NHLF	lung
40	chr11:71699600-71712400	Weak transcription	Aorta	Aorta
41	chr11:71699800-71705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:71699800-71709200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:71700000-71706000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:71700200-71702200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:71701000-71702200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:71701000-71702200	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr11:71701000-71702200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:71701000-71702200	Strong transcription	Spleen	Spleen
49	chr11:71701000-71702400	Genic enhancers	GM12878-XiMat	blood
50	chr11:71701000-71702600	Strong transcription	Primary T cells fromperipheralblood	blood

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