Variant report

Variant	rs66763553
Chromosome Location	chr11:92984022-92984023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11020196	0.88[ASN][1000 genomes]
rs11020197	0.88[ASN][1000 genomes]
rs11020198	0.86[ASN][1000 genomes]
rs11020199	0.90[ASN][1000 genomes]
rs11020200	0.90[ASN][1000 genomes]
rs11020204	0.81[ASN][1000 genomes]
rs11020206	0.86[ASN][1000 genomes]
rs11020207	0.90[ASN][1000 genomes]
rs11020208	0.92[ASN][1000 genomes]
rs1446915	0.85[ASN][1000 genomes]
rs1446916	0.85[ASN][1000 genomes]
rs16918677	0.93[ASN][1000 genomes]
rs2166583	0.81[ASN][1000 genomes]
rs2399605	0.90[ASN][1000 genomes]
rs3943572	0.82[ASN][1000 genomes]
rs4753437	0.86[ASN][1000 genomes]
rs4753438	0.88[ASN][1000 genomes]
rs4753439	0.90[ASN][1000 genomes]
rs58121936	0.92[ASN][1000 genomes]
rs7121033	0.92[ASN][1000 genomes]
rs7121713	0.92[ASN][1000 genomes]
rs753517	0.89[ASN][1000 genomes]
rs7933585	0.88[ASN][1000 genomes]
rs7933922	0.90[ASN][1000 genomes]
rs7936669	0.87[ASN][1000 genomes]
rs7936931	0.90[ASN][1000 genomes]
rs935447	0.86[ASN][1000 genomes]
rs935448	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv436	chr11:92967000-92985674	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv975335	chr11:92975294-92989536	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92981800-92984200	Enhancers	Stomach Smooth Muscle	stomach
2	chr11:92982000-92984200	Enhancers	Fetal Lung	lung
3	chr11:92982400-92984200	Enhancers	Fetal Stomach	stomach
4	chr11:92983200-92984600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:92983200-92985000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:92983600-92984400	Weak transcription	Fetal Intestine Small	intestine
7	chr11:92983800-92985000	Weak transcription	Liver	Liver
8	chr11:92983800-92989000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:92984000-92985000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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