Variant report

Variant	rs11020198
Chromosome Location	chr11:92936341-92936342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:92929302..92933098-chr11:92935947..92940033,5	K562	blood:

Variant related genes	Relation type
ENSG00000180773	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10830986	0.85[ASN][1000 genomes]
rs10830987	0.83[ASN][1000 genomes]
rs10830990	0.84[ASN][1000 genomes]
rs10830992	0.85[ASN][1000 genomes]
rs10830993	0.85[ASN][1000 genomes]
rs10830995	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10830997	0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.88[ASN][1000 genomes]
rs10830999	0.88[ASN][1000 genomes]
rs10831000	0.86[ASN][1000 genomes]
rs10831001	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10831002	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10831007	0.89[ASN][1000 genomes]
rs11020180	0.83[ASN][1000 genomes]
rs11020183	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11020189	0.84[ASN][1000 genomes]
rs11020190	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[ASN][1000 genomes]
rs11020191	0.86[ASN][1000 genomes]
rs11020192	0.88[ASN][1000 genomes]
rs11020196	0.97[ASN][1000 genomes]
rs11020197	0.97[ASN][1000 genomes]
rs11020199	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020200	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020204	0.86[ASN][1000 genomes]
rs11020206	0.91[ASN][1000 genomes]
rs11020207	0.90[ASN][1000 genomes]
rs11020208	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12221889	0.83[ASN][1000 genomes]
rs12365990	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1446915	0.84[ASN][1000 genomes]
rs1446916	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16918625	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16918677	0.92[ASN][1000 genomes]
rs2121467	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2166583	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2399605	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758676	0.85[ASN][1000 genomes]
rs3943572	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3957618	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4753437	0.83[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.82[YRI][hapmap];0.99[ASN][1000 genomes]
rs4753438	0.93[ASN][1000 genomes]
rs4753439	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58121936	0.93[ASN][1000 genomes]
rs66763553	0.86[ASN][1000 genomes]
rs67573258	0.83[ASN][1000 genomes]
rs7121033	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7121713	0.82[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7933585	0.97[ASN][1000 genomes]
rs7933922	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7936669	0.94[ASN][1000 genomes]
rs7936931	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs935447	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935448	0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv33564	chr11:92918600-92936545	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links