Variant report

Variant	rs58121936
Chromosome Location	chr11:92951306-92951307
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10830986	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10830987	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10830990	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10830992	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10830993	0.82[ASN][1000 genomes]
rs10830995	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10830997	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10830999	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10831000	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10831001	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10831002	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10831007	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11020180	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11020183	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11020189	0.86[ASN][1000 genomes]
rs11020190	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11020191	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11020192	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11020196	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11020197	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020198	0.93[ASN][1000 genomes]
rs11020199	0.97[ASN][1000 genomes]
rs11020200	0.97[ASN][1000 genomes]
rs11020204	0.87[ASN][1000 genomes]
rs11020206	0.92[ASN][1000 genomes]
rs11020207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020208	0.99[ASN][1000 genomes]
rs12221889	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12365990	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1446915	0.87[ASN][1000 genomes]
rs1446916	0.87[ASN][1000 genomes]
rs16918625	0.82[ASN][1000 genomes]
rs16918677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2121467	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2166583	0.88[ASN][1000 genomes]
rs2399605	0.97[ASN][1000 genomes]
rs3758676	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3943572	0.90[ASN][1000 genomes]
rs3957618	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4753437	0.94[ASN][1000 genomes]
rs4753438	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4753439	0.97[ASN][1000 genomes]
rs66763553	0.92[ASN][1000 genomes]
rs67573258	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7121033	0.98[ASN][1000 genomes]
rs7121713	0.99[ASN][1000 genomes]
rs753517	0.82[ASN][1000 genomes]
rs7933585	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7933922	0.97[ASN][1000 genomes]
rs7936669	0.94[ASN][1000 genomes]
rs7936931	0.97[ASN][1000 genomes]
rs935447	0.93[ASN][1000 genomes]
rs935448	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92950000-92954600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:92950600-92951600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr11:92951000-92952200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:92951200-92951400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:92951200-92951400	Enhancers	Esophagus	oesophagus
6	chr11:92951200-92951600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr11:92951200-92952800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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