Variant report

Variant	rs11020208
Chromosome Location	chr11:92961333-92961334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10830986	0.81[ASN][1000 genomes]
rs10830987	0.83[ASN][1000 genomes]
rs10830992	0.81[ASN][1000 genomes]
rs10830993	0.81[ASN][1000 genomes]
rs10830995	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs10830997	0.81[ASN][1000 genomes]
rs10830999	0.81[ASN][1000 genomes]
rs10831000	0.83[ASN][1000 genomes]
rs10831001	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs10831002	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs10831007	0.82[ASN][1000 genomes]
rs11020180	0.83[ASN][1000 genomes]
rs11020183	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs11020189	0.84[ASN][1000 genomes]
rs11020190	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs11020191	0.83[ASN][1000 genomes]
rs11020192	0.81[ASN][1000 genomes]
rs11020196	0.94[ASN][1000 genomes]
rs11020197	0.94[ASN][1000 genomes]
rs11020198	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11020199	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020200	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020204	0.88[ASN][1000 genomes]
rs11020206	0.94[ASN][1000 genomes]
rs11020207	0.96[ASN][1000 genomes]
rs12221889	0.83[ASN][1000 genomes]
rs12365990	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs1446915	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1446916	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16918625	0.82[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16918677	0.99[ASN][1000 genomes]
rs2121467	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs2166583	0.88[ASN][1000 genomes]
rs2399605	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758676	0.81[ASN][1000 genomes]
rs3943572	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs3957618	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs4753437	0.82[CHB][hapmap];0.92[ASN][1000 genomes]
rs4753438	0.94[ASN][1000 genomes]
rs4753439	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58121936	0.99[ASN][1000 genomes]
rs66763553	0.92[ASN][1000 genomes]
rs67573258	0.83[ASN][1000 genomes]
rs7111174	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7121033	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7121713	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753517	0.82[ASN][1000 genomes]
rs7933585	0.94[ASN][1000 genomes]
rs7933922	0.97[ASN][1000 genomes]
rs7936669	0.93[ASN][1000 genomes]
rs7936931	0.97[ASN][1000 genomes]
rs935447	0.82[CHB][hapmap];0.93[ASN][1000 genomes]
rs935448	0.81[CHB][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92955200-92962200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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