Variant report

Variant	rs16918625
Chromosome Location	chr11:92916819-92916820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10830986	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10830987	0.94[ASN][1000 genomes]
rs10830990	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10830992	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10830993	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10830995	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10830997	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10830999	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10831000	0.97[ASN][1000 genomes]
rs10831001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10831002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10831007	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11020180	0.94[ASN][1000 genomes]
rs11020183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11020189	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11020190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11020191	0.97[ASN][1000 genomes]
rs11020192	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11020196	0.86[ASN][1000 genomes]
rs11020197	0.86[ASN][1000 genomes]
rs11020198	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020199	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11020200	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11020206	0.81[ASN][1000 genomes]
rs11020208	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12221889	0.94[ASN][1000 genomes]
rs12365990	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1446915	0.81[EUR][1000 genomes]
rs1446916	0.83[EUR][1000 genomes]
rs16918677	0.81[ASN][1000 genomes]
rs2121467	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2166583	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2399605	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3758676	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3943572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3957618	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4753437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4753438	0.83[ASN][1000 genomes]
rs4753439	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58121936	0.82[ASN][1000 genomes]
rs67573258	0.94[ASN][1000 genomes]
rs7111174	0.87[CHB][hapmap]
rs7121033	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7121713	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs753517	0.86[CHB][hapmap]
rs7925288	0.81[YRI][hapmap]
rs7933585	0.86[ASN][1000 genomes]
rs7933922	0.84[ASN][1000 genomes]
rs7936669	0.84[ASN][1000 genomes]
rs7936931	0.84[ASN][1000 genomes]
rs935447	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs935448	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv818858	chr11:92898342-92932229	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	esv2757465	chr11:92898342-92934137	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	esv2759853	chr11:92898342-92934137	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	esv2829957	chr11:92915544-92932229	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92891600-92925400	Weak transcription	Fetal Heart	heart
2	chr11:92891800-92929800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:92895400-92920000	Weak transcription	Psoas Muscle	Psoas
4	chr11:92895400-92921400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:92897800-92917200	Weak transcription	NHDF-Ad	bronchial
6	chr11:92898200-92919800	Weak transcription	Brain Angular Gyrus	brain
7	chr11:92898200-92920000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:92900600-92929600	Weak transcription	HUVEC	blood vessel
9	chr11:92910800-92918600	Weak transcription	Fetal Kidney	kidney
10	chr11:92911200-92930000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:92911400-92919000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:92911400-92919200	Weak transcription	Fetal Intestine Small	intestine
13	chr11:92911400-92925400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:92911600-92918800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr11:92911600-92919600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:92911600-92920000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:92911600-92920000	Weak transcription	HMEC	breast
18	chr11:92911600-92920000	Weak transcription	HSMMtube	muscle
19	chr11:92911600-92920800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:92911600-92925400	Weak transcription	Esophagus	oesophagus
21	chr11:92911600-92925400	Weak transcription	Gastric	stomach
22	chr11:92911600-92929800	Weak transcription	Right Ventricle	heart
23	chr11:92911600-92930000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:92911800-92920000	Weak transcription	Placenta	Placenta
25	chr11:92911800-92929800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:92911800-92930200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:92912200-92920200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:92912200-92920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:92912200-92929800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:92912200-92929800	Weak transcription	Thymus	Thymus
31	chr11:92912200-92930000	Weak transcription	Fetal Stomach	stomach
32	chr11:92912400-92917400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:92912400-92919000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:92912400-92919000	Weak transcription	Brain Anterior Caudate	brain
35	chr11:92912400-92920200	Weak transcription	HepG2	liver
36	chr11:92912400-92920600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:92912400-92929800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:92912400-92930000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:92912600-92917400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:92912600-92918000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:92912600-92918200	Weak transcription	Fetal Brain Male	brain
42	chr11:92912600-92918400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:92912600-92918800	Strong transcription	Primary hematopoietic stem cells	blood
44	chr11:92912600-92919200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:92912600-92919800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:92912600-92919800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:92912600-92920600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:92912600-92920800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:92912600-92920800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:92912600-92920800	Weak transcription	Left Ventricle	heart

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