Variant report

Variant	rs7121033
Chromosome Location	chr11:92958762-92958763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:92958630-92959356	A549	lung:	n/a	chr11:92958984-92959005 chr11:92958996-92959003 chr11:92958989-92959007
2	RAD21	chr11:92958734-92959219	ECC-1	luminal epithelium:	n/a	chr11:92958987-92959006 chr11:92958996-92959005
3	RAD21	chr11:92958745-92959263	Hela-S3	cervix:	n/a	chr11:92958987-92959006 chr11:92958996-92959005
4	FOXA1	chr11:92958703-92959053	T-47D	breast:	n/a	n/a
5	CTCF	chr11:92958484-92959497	SK-N-SH	brain:	n/a	chr11:92958984-92959005 chr11:92958996-92959003 chr11:92958989-92959007
6	CTCF	chr11:92958741-92959305	HCT-116	colon:	n/a	chr11:92958984-92959005 chr11:92958996-92959003 chr11:92958989-92959007
7	RAD21	chr11:92958684-92959251	SK-N-SH_RA	brain:	n/a	chr11:92958987-92959006 chr11:92958996-92959005
8	RAD21	chr11:92958706-92959105	HepG2	liver:	n/a	chr11:92958987-92959006 chr11:92958996-92959005
9	RAD21	chr11:92958570-92959460	SK-N-SH	brain:	n/a	chr11:92958987-92959006 chr11:92958996-92959005
10	SMC3	chr11:92958415-92959479	SK-N-SH	brain:	n/a	chr11:92958991-92959005
11	RAD21	chr11:92958668-92959166	MCF-7	breast:	n/a	chr11:92958987-92959006 chr11:92958996-92959005
12	CTCF	chr11:92958757-92959176	K562	blood:	n/a	chr11:92958984-92959005 chr11:92958996-92959003 chr11:92958989-92959007
13	RAD21	chr11:92958762-92959173	GM12878	blood:	n/a	chr11:92958987-92959006 chr11:92958996-92959005
14	SMC3	chr11:92958662-92959242	Hela-S3	cervix:	n/a	chr11:92958991-92959005
15	RFX5	chr11:92958753-92959196	Hela-S3	cervix:	n/a	n/a
16	RAD21	chr11:92958651-92959280	HCT-116	colon:	n/a	chr11:92958987-92959006 chr11:92958996-92959005

No.	Distal block	Cell Line	Cell type
1	chr11:92864615..92865138-chr11:92958534..92959079,2	K562	blood:
2	chr11:92674953..92675677-chr11:92958460..92959354,2	MCF-7	breast:
3	chr11:92674878..92675718-chr11:92958646..92959206,2	MCF-7	breast:
4	chr11:92862981..92865243-chr11:92958375..92960659,2	MCF-7	breast:
5	chr11:92674857..92675942-chr11:92958477..92959471,4	K562	blood:

Variant related genes	Relation type
ENSG00000233737	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10830986	0.80[ASN][1000 genomes]
rs10830987	0.82[ASN][1000 genomes]
rs10830992	0.80[ASN][1000 genomes]
rs10830993	0.80[ASN][1000 genomes]
rs10830995	0.80[ASN][1000 genomes]
rs10830997	0.80[ASN][1000 genomes]
rs10830999	0.80[ASN][1000 genomes]
rs10831000	0.82[ASN][1000 genomes]
rs10831002	0.80[ASN][1000 genomes]
rs10831007	0.82[ASN][1000 genomes]
rs11020180	0.82[ASN][1000 genomes]
rs11020183	0.80[ASN][1000 genomes]
rs11020189	0.84[ASN][1000 genomes]
rs11020190	0.80[ASN][1000 genomes]
rs11020191	0.82[ASN][1000 genomes]
rs11020192	0.80[ASN][1000 genomes]
rs11020196	0.94[ASN][1000 genomes]
rs11020197	0.94[ASN][1000 genomes]
rs11020198	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11020199	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020200	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020204	0.88[ASN][1000 genomes]
rs11020206	0.93[ASN][1000 genomes]
rs11020207	0.97[ASN][1000 genomes]
rs11020208	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12221889	0.82[ASN][1000 genomes]
rs12365990	0.82[ASN][1000 genomes]
rs1446915	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1446916	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16918625	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16918677	0.99[ASN][1000 genomes]
rs2121467	0.82[ASN][1000 genomes]
rs2166583	0.87[ASN][1000 genomes]
rs2399605	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758676	0.80[ASN][1000 genomes]
rs3943572	0.89[ASN][1000 genomes]
rs3957618	0.81[ASN][1000 genomes]
rs4753437	0.92[ASN][1000 genomes]
rs4753438	0.94[ASN][1000 genomes]
rs4753439	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58121936	0.98[ASN][1000 genomes]
rs66763553	0.92[ASN][1000 genomes]
rs67573258	0.82[ASN][1000 genomes]
rs7121713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs753517	0.81[ASN][1000 genomes]
rs7933585	0.94[ASN][1000 genomes]
rs7933922	0.96[ASN][1000 genomes]
rs7936669	0.92[ASN][1000 genomes]
rs7936931	0.96[ASN][1000 genomes]
rs935447	0.92[ASN][1000 genomes]
rs935448	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92955200-92962200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:92958200-92959200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:92958400-92958800	Enhancers	Brain Germinal Matrix	brain
4	chr11:92958600-92959000	Enhancers	Fetal Brain Male	brain

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