Variant report

Variant	rs11020207
Chromosome Location	chr11:92957695-92957696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr11:92957593-92957917	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr11:92957622-92957872	H1-hESC	embryonic stem cell:	n/a	n/a
3	E2F6	chr11:92957484-92957917	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr11:92957687-92957728	A549	lung:	n/a	n/a
5	JUND	chr11:92957624-92957711	K562	blood:	n/a	n/a
6	MAX	chr11:92957593-92957840	H1-hESC	embryonic stem cell:	n/a	chr11:92957691-92957700 chr11:92957729-92957740 chr11:92957730-92957740 chr11:92957691-92957701
7	MAX	chr11:92957647-92957846	NB4	blood:	n/a	chr11:92957691-92957700 chr11:92957729-92957740 chr11:92957730-92957740 chr11:92957691-92957701
8	MAX	chr11:92957529-92957936	H1-hESC	embryonic stem cell:	n/a	chr11:92957691-92957700 chr11:92957729-92957740 chr11:92957730-92957740 chr11:92957691-92957701
9	MAX	chr11:92957514-92957902	H1-hESC	embryonic stem cell:	n/a	chr11:92957691-92957700 chr11:92957729-92957740 chr11:92957730-92957740 chr11:92957691-92957701

Variant related genes	Relation type
ENSG00000233737	TF binding region

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10830986	0.81[AMR][1000 genomes]
rs10830987	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10830990	0.81[AMR][1000 genomes]
rs10830992	0.81[AMR][1000 genomes]
rs10830995	0.81[AMR][1000 genomes]
rs10830997	0.81[AMR][1000 genomes]
rs10830999	0.81[AMR][1000 genomes]
rs10831000	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10831001	0.81[AMR][1000 genomes]
rs10831002	0.81[AMR][1000 genomes]
rs10831007	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11020180	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11020183	0.81[AMR][1000 genomes]
rs11020189	0.82[ASN][1000 genomes]
rs11020190	0.81[AMR][1000 genomes]
rs11020191	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11020192	0.81[AMR][1000 genomes]
rs11020196	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11020197	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020198	0.90[ASN][1000 genomes]
rs11020199	0.94[ASN][1000 genomes]
rs11020200	0.94[ASN][1000 genomes]
rs11020204	0.88[ASN][1000 genomes]
rs11020206	0.90[ASN][1000 genomes]
rs11020208	0.96[ASN][1000 genomes]
rs12221889	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12365990	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1446915	0.85[ASN][1000 genomes]
rs1446916	0.85[ASN][1000 genomes]
rs16918677	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2121467	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2166583	0.84[ASN][1000 genomes]
rs2399605	0.94[ASN][1000 genomes]
rs3758676	0.81[AMR][1000 genomes]
rs3943572	0.86[ASN][1000 genomes]
rs3957618	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4753437	0.90[ASN][1000 genomes]
rs4753438	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4753439	0.94[ASN][1000 genomes]
rs58121936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66763553	0.90[ASN][1000 genomes]
rs67573258	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7121033	0.97[ASN][1000 genomes]
rs7121713	0.96[ASN][1000 genomes]
rs7933585	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7933922	0.94[ASN][1000 genomes]
rs7936669	0.91[ASN][1000 genomes]
rs7936931	0.94[ASN][1000 genomes]
rs935447	0.90[ASN][1000 genomes]
rs935448	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3385560	chr11:92956504-92958602	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3405119	chr11:92957004-92958152	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92955200-92962200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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