Variant report

Variant	rs11020183
Chromosome Location	chr11:92896910-92896911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:92895585..92897529-chr11:92904062..92906165,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10830986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10830987	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10830990	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10830992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10830993	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10830995	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10830997	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10830999	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831000	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831007	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020180	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11020189	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020191	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020192	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020196	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11020197	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11020198	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11020199	0.84[ASN][1000 genomes]
rs11020200	0.84[ASN][1000 genomes]
rs11020206	0.80[ASN][1000 genomes]
rs11020207	0.81[AMR][1000 genomes]
rs11020208	0.81[ASN][1000 genomes]
rs12221889	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12365990	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16918625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs16918677	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2121467	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2166583	0.89[ASN][1000 genomes]
rs2399605	0.84[ASN][1000 genomes]
rs3758676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3943572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3957618	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4753437	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4753438	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4753439	0.84[ASN][1000 genomes]
rs58121936	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67573258	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111174	0.87[CHB][hapmap]
rs7121033	0.80[ASN][1000 genomes]
rs7121713	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs753517	0.87[CHB][hapmap]
rs7933585	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7933922	0.84[ASN][1000 genomes]
rs7936669	0.85[ASN][1000 genomes]
rs7936931	0.84[ASN][1000 genomes]
rs935447	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs935448	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047828	chr11:92886648-92915055	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1045544	chr11:92889187-92915055	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1041794	chr11:92893654-92915055	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92868400-92914600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:92875400-92910400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:92876600-92900400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:92876600-92910600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:92876800-92910600	Weak transcription	Lung	lung
6	chr11:92877000-92911400	Weak transcription	Osteobl	bone
7	chr11:92877800-92899600	Weak transcription	NHLF	lung
8	chr11:92877800-92915000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:92878400-92910600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:92879000-92900200	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:92879000-92910800	Weak transcription	HSMMtube	muscle
12	chr11:92879600-92910000	Weak transcription	Fetal Brain Male	brain
13	chr11:92879600-92910800	Weak transcription	HMEC	breast
14	chr11:92881200-92899200	Weak transcription	NH-A	brain
15	chr11:92882000-92910600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:92884600-92897000	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:92885000-92897200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:92885800-92910000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:92888000-92900000	Weak transcription	Fetal Kidney	kidney
20	chr11:92888400-92900600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:92889000-92899800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:92889000-92900200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:92889600-92902200	Weak transcription	Fetal Intestine Large	intestine
24	chr11:92889800-92900200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:92889800-92911200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:92889800-92913600	Weak transcription	Spleen	Spleen
27	chr11:92890000-92899600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr11:92890400-92901400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:92890400-92901800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:92890400-92910000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:92890600-92901400	Strong transcription	Dnd41	blood
32	chr11:92890600-92911600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:92890800-92900800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:92891000-92897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:92891200-92897600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:92891200-92899000	Weak transcription	NHEK	skin
37	chr11:92891200-92903800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:92891400-92900400	Weak transcription	GM12878-XiMat	blood
39	chr11:92891600-92925400	Weak transcription	Fetal Heart	heart
40	chr11:92891800-92910800	Weak transcription	Right Ventricle	heart
41	chr11:92891800-92929800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:92892000-92910800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:92892400-92901400	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:92892600-92900000	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr11:92892600-92901000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:92892600-92902400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:92892600-92910400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:92892800-92901400	Strong transcription	Primary B cells from cord blood	blood
49	chr11:92893000-92900800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:92893200-92901400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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