Variant report

Variant	rs11020206
Chromosome Location	chr11:92957409-92957410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10830986	0.80[ASN][1000 genomes]
rs10830992	0.80[ASN][1000 genomes]
rs10830993	0.80[ASN][1000 genomes]
rs10830995	0.80[ASN][1000 genomes]
rs10830997	0.80[ASN][1000 genomes]
rs10830999	0.80[ASN][1000 genomes]
rs10831002	0.80[ASN][1000 genomes]
rs10831007	0.82[ASN][1000 genomes]
rs11020183	0.80[ASN][1000 genomes]
rs11020189	0.84[ASN][1000 genomes]
rs11020190	0.80[ASN][1000 genomes]
rs11020192	0.80[ASN][1000 genomes]
rs11020196	0.88[ASN][1000 genomes]
rs11020197	0.88[ASN][1000 genomes]
rs11020198	0.91[ASN][1000 genomes]
rs11020199	0.95[ASN][1000 genomes]
rs11020200	0.95[ASN][1000 genomes]
rs11020204	0.93[ASN][1000 genomes]
rs11020207	0.90[ASN][1000 genomes]
rs11020208	0.94[ASN][1000 genomes]
rs1446915	0.85[ASN][1000 genomes]
rs1446916	0.87[ASN][1000 genomes]
rs16918625	0.81[ASN][1000 genomes]
rs16918677	0.93[ASN][1000 genomes]
rs2166583	0.86[ASN][1000 genomes]
rs2399605	0.95[ASN][1000 genomes]
rs3758676	0.80[ASN][1000 genomes]
rs3943572	0.88[ASN][1000 genomes]
rs4753437	0.90[ASN][1000 genomes]
rs4753438	0.92[ASN][1000 genomes]
rs4753439	0.95[ASN][1000 genomes]
rs58121936	0.92[ASN][1000 genomes]
rs66763553	0.86[ASN][1000 genomes]
rs7121033	0.93[ASN][1000 genomes]
rs7121713	0.94[ASN][1000 genomes]
rs7933585	0.88[ASN][1000 genomes]
rs7933922	0.95[ASN][1000 genomes]
rs7936669	0.91[ASN][1000 genomes]
rs7936931	0.95[ASN][1000 genomes]
rs935447	0.91[ASN][1000 genomes]
rs935448	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3385560	chr11:92956504-92958602	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3405119	chr11:92957004-92958152	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92955200-92962200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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