Variant report

Variant	rs11020189
Chromosome Location	chr11:92911367-92911368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10830986	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10830987	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10830990	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10830992	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10830993	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10830995	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10830997	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10830999	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831000	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831001	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831002	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831007	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020180	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11020183	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020190	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020191	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020192	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020196	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11020197	0.83[ASN][1000 genomes]
rs11020198	0.84[ASN][1000 genomes]
rs11020199	0.87[ASN][1000 genomes]
rs11020200	0.87[ASN][1000 genomes]
rs11020206	0.84[ASN][1000 genomes]
rs11020207	0.82[ASN][1000 genomes]
rs11020208	0.84[ASN][1000 genomes]
rs12221889	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12365990	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918625	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16918677	0.85[ASN][1000 genomes]
rs2121467	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2166583	0.86[ASN][1000 genomes]
rs2399605	0.87[ASN][1000 genomes]
rs3758676	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3943572	0.88[ASN][1000 genomes]
rs3957618	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4753437	0.85[ASN][1000 genomes]
rs4753438	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4753439	0.87[ASN][1000 genomes]
rs58121936	0.86[ASN][1000 genomes]
rs67573258	0.94[ASN][1000 genomes]
rs7121033	0.84[ASN][1000 genomes]
rs7121713	0.84[ASN][1000 genomes]
rs7933585	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7933922	0.87[ASN][1000 genomes]
rs7936669	0.86[ASN][1000 genomes]
rs7936931	0.87[ASN][1000 genomes]
rs935447	0.84[ASN][1000 genomes]
rs935448	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047828	chr11:92886648-92915055	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1045544	chr11:92889187-92915055	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1041794	chr11:92893654-92915055	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv818858	chr11:92898342-92932229	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	esv2757465	chr11:92898342-92934137	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
11	esv2759853	chr11:92898342-92934137	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92868400-92914600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:92877000-92911400	Weak transcription	Osteobl	bone
3	chr11:92877800-92915000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:92889800-92913600	Weak transcription	Spleen	Spleen
5	chr11:92890600-92911600	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:92891600-92925400	Weak transcription	Fetal Heart	heart
7	chr11:92891800-92929800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:92895400-92920000	Weak transcription	Psoas Muscle	Psoas
9	chr11:92895400-92921400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:92897200-92914000	Weak transcription	Small Intestine	intestine
11	chr11:92897800-92911400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:92897800-92917200	Weak transcription	NHDF-Ad	bronchial
13	chr11:92898000-92912000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:92898200-92919800	Weak transcription	Brain Angular Gyrus	brain
15	chr11:92898200-92920000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:92898400-92911800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:92898400-92912000	Weak transcription	HepG2	liver
18	chr11:92898800-92911400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:92899600-92912200	Weak transcription	HSMM	muscle
20	chr11:92900600-92929600	Weak transcription	HUVEC	blood vessel
21	chr11:92901200-92911400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:92907000-92911800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:92909800-92912600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
24	chr11:92909800-92914600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:92910000-92911400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:92910000-92911600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
27	chr11:92910000-92911800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
28	chr11:92910000-92912400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:92910000-92912600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:92910000-92912600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
31	chr11:92910000-92912600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr11:92910000-92912600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:92910000-92912600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:92910000-92912600	ZNF genes & repeats	Brain Germinal Matrix	brain
35	chr11:92910000-92912800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
36	chr11:92910000-92912800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
37	chr11:92910000-92913000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr11:92910000-92913000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:92910000-92913200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:92910000-92913200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr11:92910000-92913600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:92910000-92913800	ZNF genes & repeats	Dnd41	blood
43	chr11:92910000-92915000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
44	chr11:92910200-92912200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:92910200-92913200	ZNF genes & repeats	Fetal Brain Female	brain
46	chr11:92910200-92913800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:92910200-92914000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:92910400-92911600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
49	chr11:92910400-92911600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
50	chr11:92910400-92911600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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