Variant report

Variant	rs1446915
Chromosome Location	chr11:92969646-92969647
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:92969528-92970592	SK-N-SH	brain:	n/a	chr11:92970083-92970096 chr11:92970081-92970099

No.	Distal block	Cell Line	Cell type
1	chr11:92969639..92970193-chr11:93354991..93355840,3	MCF-7	breast:
2	chr11:92969485..92970477-chr11:93354947..93355840,3	MCF-7	breast:
3	chr11:92969452..92970081-chr11:93276487..93277099,2	K562	blood:

Variant related genes	Relation type
ENSG00000255233	TF binding region
ENSG00000166002	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11020196	0.83[ASN][1000 genomes]
rs11020197	0.83[ASN][1000 genomes]
rs11020198	0.84[ASN][1000 genomes]
rs11020199	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020200	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020206	0.85[ASN][1000 genomes]
rs11020207	0.85[ASN][1000 genomes]
rs11020208	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1446916	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16918625	0.81[EUR][1000 genomes]
rs16918677	0.87[ASN][1000 genomes]
rs2399605	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3943572	0.81[ASN][1000 genomes]
rs4753437	0.84[ASN][1000 genomes]
rs4753438	0.87[ASN][1000 genomes]
rs4753439	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58121936	0.87[ASN][1000 genomes]
rs66763553	0.85[ASN][1000 genomes]
rs7121033	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7121713	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7933585	0.83[ASN][1000 genomes]
rs7933922	0.88[ASN][1000 genomes]
rs7936669	0.85[ASN][1000 genomes]
rs7936931	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs935447	0.84[ASN][1000 genomes]
rs935448	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv436	chr11:92967000-92985674	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv514640	chr11:92967440-92972784	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3464353	chr11:92967896-92972804	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3464331	chr11:92967903-92972689	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3464342	chr11:92967919-92972744	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv826034	chr11:92967982-92972677	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv826035	chr11:92967982-92972713	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3464364	chr11:92968000-92972695	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv498765	chr11:92968001-92972695	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92969000-92970400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:92969600-92971000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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