Variant report

Variant	rs6799735
Chromosome Location	chr3:43495744-43495745
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17075574	1.00[YRI][hapmap]
rs17075581	1.00[YRI][hapmap]
rs17075750	1.00[AMR][1000 genomes]
rs17075757	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17075759	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17075762	1.00[AMR][1000 genomes]
rs17075773	1.00[AMR][1000 genomes]
rs17075776	1.00[AMR][1000 genomes]
rs17075780	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17075784	1.00[AMR][1000 genomes]
rs17406718	1.00[YRI][hapmap]
rs2086652	1.00[AMR][1000 genomes]
rs4368477	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs55919732	1.00[AMR][1000 genomes]
rs58694029	1.00[AMR][1000 genomes]
rs59423218	1.00[AMR][1000 genomes]
rs61304871	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829503	1.00[AMR][1000 genomes]
rs73831300	0.82[AFR][1000 genomes]
rs73831301	1.00[AMR][1000 genomes]
rs73832606	1.00[AMR][1000 genomes]
rs73832607	1.00[AMR][1000 genomes]
rs73832612	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832614	1.00[AMR][1000 genomes]
rs73832616	1.00[AMR][1000 genomes]
rs73832625	1.00[AMR][1000 genomes]
rs7649808	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6799735	FLJ10375	cis	multi-tissue	Pritchard
rs6799735	ANO10	cis	lymphoblastoid	seeQTL
rs6799735	TMEM16K	cis	multi-tissue	Pritchard
rs6799735	GZMM	trans	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:43460800-43496400	Weak transcription	HSMM	muscle
3	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
5	chr3:43474200-43504400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:43480600-43496400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:43489000-43496400	Weak transcription	Lung	lung
8	chr3:43492600-43504200	Weak transcription	Fetal Intestine Small	intestine
9	chr3:43494000-43496800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:43494600-43504200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:43495600-43495800	Enhancers	Gastric	stomach
12	chr3:43495600-43496000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:43495600-43496800	Enhancers	Right Ventricle	heart
14	chr3:43495600-43497000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:43495600-43497200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:43495600-43497200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:43495600-43497200	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links