Variant report

Variant	rs73832625
Chromosome Location	chr3:43663135-43663136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43662288..43665115-chr3:43729956..43734747,4	MCF-7	breast:
2	chr3:43662766..43665162-chr3:45770483..45773103,2	K562	blood:
3	chr3:43659494..43665311-chr3:43727005..43736111,18	K562	blood:
4	chr3:43656042..43659145-chr3:43659589..43663230,4	MCF-7	breast:
5	chr3:43660817..43665304-chr3:43729750..43735886,13	K562	blood:
6	chr3:43661381..43665060-chr3:43731246..43733752,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction
ENSG00000011198	Chromatin interaction
ENSG00000211456	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17075709	0.83[AFR][1000 genomes]
rs17075750	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075757	1.00[AMR][1000 genomes]
rs17075759	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075762	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075773	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075776	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075780	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075784	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2086652	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4368477	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55823043	0.83[AFR][1000 genomes]
rs55919732	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55969335	0.83[AFR][1000 genomes]
rs56209592	0.83[AFR][1000 genomes]
rs56849726	0.83[AFR][1000 genomes]
rs58066802	0.83[AFR][1000 genomes]
rs58310281	0.83[AFR][1000 genomes]
rs58694029	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59423218	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59433561	0.83[AFR][1000 genomes]
rs60754038	0.83[AFR][1000 genomes]
rs61304871	1.00[AMR][1000 genomes]
rs6799735	1.00[AMR][1000 genomes]
rs73829503	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831288	0.83[AFR][1000 genomes]
rs73831291	0.83[AFR][1000 genomes]
rs73831292	0.83[AFR][1000 genomes]
rs73831294	0.83[AFR][1000 genomes]
rs73831295	0.83[AFR][1000 genomes]
rs73831296	0.83[AFR][1000 genomes]
rs73831297	0.83[AFR][1000 genomes]
rs73831301	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832606	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832607	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832612	1.00[AMR][1000 genomes]
rs73832614	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832616	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832620	0.83[AFR][1000 genomes]
rs73832622	0.83[AFR][1000 genomes]
rs7649808	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43661800-43664000	Active TSS	K562	blood
2	chr3:43662000-43663800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:43662000-43664000	Active TSS	HSMMtube	muscle
4	chr3:43662000-43664200	Active TSS	HSMM	muscle
5	chr3:43662200-43664000	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr3:43662200-43664000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr3:43662200-43664000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:43662200-43664000	Active TSS	Muscle Satellite Cultured Cells	--
9	chr3:43662200-43664000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:43662200-43664000	Active TSS	NHDF-Ad	bronchial
11	chr3:43662200-43664000	Active TSS	NHLF	lung
12	chr3:43662200-43664200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:43662200-43664200	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr3:43662200-43664400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr3:43662200-43664400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:43662200-43664400	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr3:43662200-43664400	Active TSS	Fetal Brain Female	brain
18	chr3:43662200-43664600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:43662400-43663200	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr3:43662400-43663400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:43662400-43664000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:43662400-43664000	Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr3:43662400-43664000	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr3:43662400-43664000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:43662400-43664000	Active TSS	Colonic Mucosa	Colon
26	chr3:43662400-43664000	Active TSS	Fetal Muscle Trunk	muscle
27	chr3:43662400-43664000	Active TSS	Stomach Smooth Muscle	stomach
28	chr3:43662400-43664000	Active TSS	A549	lung
29	chr3:43662400-43664000	Active TSS	HMEC	breast
30	chr3:43662400-43664200	Active TSS	H1 Cell Line	embryonic stem cell
31	chr3:43662400-43664200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:43662400-43664200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:43662400-43664400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr3:43662400-43664400	Active TSS	H9 Cell Line	embryonic stem cell
35	chr3:43662400-43664400	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr3:43662400-43664400	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr3:43662600-43663200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
38	chr3:43662600-43663200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr3:43662600-43663200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:43662600-43663200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr3:43662600-43663200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr3:43662600-43663200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr3:43662600-43663200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:43662600-43663200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
45	chr3:43662600-43663200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr3:43662600-43663400	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr3:43662600-43663400	Flanking Active TSS	Dnd41	blood
48	chr3:43662600-43663600	Active TSS	Gastric	stomach
49	chr3:43662600-43664000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:43662600-43664000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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