The 2.0 version of rSNPBase

Variant report

Variant rs56209592
Chromosome Location chr3:43453019-43453020
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:43421400-43454800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr3:43430000-43460200 Weak transcription Aorta Aorta
3 chr3:43432000-43453600 Weak transcription Gastric stomach
4 chr3:43432000-43460200 Weak transcription Rectal Smooth Muscle rectum
5 chr3:43432000-43477800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr3:43432200-43453800 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr3:43432400-43453800 Weak transcription Primary T cells from cord blood blood
8 chr3:43433400-43458800 Weak transcription Pancreas Pancrea
9 chr3:43436400-43475800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr3:43440800-43464400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr3:43441000-43453800 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr3:43442000-43455200 Weak transcription Right Ventricle heart
13 chr3:43442200-43455200 Weak transcription Fetal Stomach stomach
14 chr3:43442400-43460200 Weak transcription Fetal Muscle Leg muscle
15 chr3:43442600-43460200 Weak transcription Adipose Nuclei Adipose
16 chr3:43443000-43495600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr3:43443400-43465800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr3:43447000-43465800 Weak transcription Monocytes-CD14+_RO01746 blood
19 chr3:43447800-43460400 Weak transcription Left Ventricle heart
20 chr3:43447800-43481200 Weak transcription Lung lung
21 chr3:43448200-43454600 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr3:43448200-43464800 Weak transcription Muscle Satellite Cultured Cells --
23 chr3:43448200-43464800 Weak transcription Osteobl bone
24 chr3:43448400-43460200 Weak transcription HSMM muscle
25 chr3:43449000-43473000 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr3:43449000-43474400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr3:43449200-43465600 Weak transcription HMEC breast
28 chr3:43449400-43454400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr3:43449600-43455000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr3:43449600-43460000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr3:43449600-43462600 Weak transcription Primary neutrophils fromperipheralblood blood
32 chr3:43451000-43459400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr3:43451000-43459400 Weak transcription Fetal Intestine Small intestine
34 chr3:43451000-43460200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr3:43451000-43473000 Weak transcription Duodenum Mucosa Duodenum
36 chr3:43451600-43454000 Enhancers Fetal Lung lung
37 chr3:43451800-43455800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
38 chr3:43451800-43456400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
39 chr3:43452200-43454200 Enhancers Cortex derived primary cultured neurospheres brain
40 chr3:43452400-43453200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
41 chr3:43452400-43454000 Enhancers Brain Cingulate Gyrus brain
42 chr3:43452400-43454000 Enhancers Brain Hippocampus Middle brain
43 chr3:43452600-43453800 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr3:43452600-43453800 Enhancers Brain Anterior Caudate brain
45 chr3:43452600-43454000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
46 chr3:43452600-43454000 Enhancers Brain Inferior Temporal Lobe brain
47 chr3:43452600-43454000 Enhancers Brain Substantia Nigra brain
48 chr3:43452800-43453200 Enhancers Fetal Brain Male brain
49 chr3:43452800-43453400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr3:43452800-43453400 Flanking Active TSS Brain Germinal Matrix brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015