The 2.0 version of rSNPBase

Variant report

Variant rs17075564
Chromosome Location chr3:43371840-43371841
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:43332800-43377000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr3:43346000-43377000 Weak transcription K562 blood
3 chr3:43348400-43378800 Weak transcription Hela-S3 cervix
4 chr3:43351000-43375600 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr3:43353000-43374000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr3:43353400-43375200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr3:43359400-43374000 Weak transcription Placenta Placenta
8 chr3:43359400-43376600 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr3:43359600-43372000 Weak transcription NHLF lung
10 chr3:43359600-43372200 Weak transcription HSMM muscle
11 chr3:43359600-43375400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr3:43359600-43376200 Weak transcription H1 Cell Line embryonic stem cell
13 chr3:43360400-43375600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr3:43360400-43376200 Weak transcription Brain Germinal Matrix brain
15 chr3:43361200-43374600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr3:43361200-43377800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr3:43363600-43374000 Weak transcription Fetal Muscle Trunk muscle
18 chr3:43365400-43373600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr3:43367800-43375800 Weak transcription Aorta Aorta
20 chr3:43368200-43372200 Enhancers Primary T cells from cord blood blood
21 chr3:43368200-43374200 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr3:43368200-43375000 Weak transcription Fetal Stomach stomach
23 chr3:43368200-43375600 Weak transcription Spleen Spleen
24 chr3:43368200-43375800 Weak transcription Pancreas Pancrea
25 chr3:43368200-43376200 Weak transcription Lung lung
26 chr3:43368200-43377000 Weak transcription Ovary ovary
27 chr3:43368200-43377200 Weak transcription Gastric stomach
28 chr3:43368200-43377600 Weak transcription Colonic Mucosa Colon
29 chr3:43368400-43372200 Weak transcription Dnd41 blood
30 chr3:43368400-43376600 Weak transcription Osteobl bone
31 chr3:43368400-43379200 Weak transcription Stomach Mucosa stomach
32 chr3:43368400-43379400 Weak transcription Fetal Brain Male brain
33 chr3:43368600-43373800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr3:43368800-43375800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr3:43368800-43376800 Weak transcription HepG2 liver
36 chr3:43369000-43373600 Weak transcription GM12878-XiMat blood
37 chr3:43369000-43374400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr3:43369000-43375000 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr3:43369000-43375600 Weak transcription Muscle Satellite Cultured Cells --
40 chr3:43369000-43375800 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr3:43369000-43377200 Weak transcription Rectal Smooth Muscle rectum
42 chr3:43369000-43378600 Weak transcription Rectal Mucosa Donor 31 rectum
43 chr3:43369200-43374000 Weak transcription Duodenum Mucosa Duodenum
44 chr3:43369200-43374000 Weak transcription Fetal Lung lung
45 chr3:43369200-43375600 Weak transcription Pancreatic Islets Pancreatic Islet
46 chr3:43369200-43376600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr3:43369400-43373000 Weak transcription Primary B cells from cord blood blood
48 chr3:43369400-43373600 Weak transcription Liver Liver
49 chr3:43369400-43374400 Weak transcription Fetal Intestine Large intestine
50 chr3:43369400-43375400 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015