The 2.0 version of rSNPBase

Variant report

Variant rs55765643
Chromosome Location chr3:43361857-43361858
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:43332800-43377000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr3:43340600-43365600 Weak transcription Esophagus oesophagus
3 chr3:43345000-43368200 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr3:43345400-43367400 Weak transcription Rectal Smooth Muscle rectum
5 chr3:43345600-43364400 Weak transcription HMEC breast
6 chr3:43346000-43377000 Weak transcription K562 blood
7 chr3:43346400-43367200 Weak transcription Fetal Lung lung
8 chr3:43348400-43378800 Weak transcription Hela-S3 cervix
9 chr3:43349600-43363200 Weak transcription GM12878-XiMat blood
10 chr3:43350000-43367400 Weak transcription Aorta Aorta
11 chr3:43350400-43365800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr3:43351000-43375600 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr3:43352600-43363200 Enhancers Primary T killer naive cells fromperipheralblood blood
14 chr3:43353000-43374000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr3:43353200-43367400 Weak transcription Dnd41 blood
16 chr3:43353400-43375200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr3:43354400-43369600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr3:43355000-43364600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr3:43356000-43362200 Enhancers Primary T helper naive cells fromperipheralblood blood
20 chr3:43356000-43362200 Enhancers Primary T killer memory cells from peripheral blood blood
21 chr3:43356200-43362800 Enhancers Primary T helper cells PMA-I stimulated --
22 chr3:43356400-43362000 Genic enhancers Primary T cells fromperipheralblood blood
23 chr3:43356400-43363600 Enhancers Adipose Nuclei Adipose
24 chr3:43356600-43363600 Genic enhancers Primary T helper cells fromperipheralblood blood
25 chr3:43357800-43363600 Enhancers Primary T helper naive cells from peripheral blood blood
26 chr3:43358200-43362000 Enhancers Skeletal Muscle Male skeletal muscle
27 chr3:43359000-43362200 Genic enhancers Primary T cells from cord blood blood
28 chr3:43359200-43362000 Enhancers Ovary ovary
29 chr3:43359200-43367000 Weak transcription Colon Smooth Muscle Colon
30 chr3:43359400-43366400 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr3:43359400-43366800 Weak transcription Small Intestine intestine
32 chr3:43359400-43367800 Weak transcription Stomach Mucosa stomach
33 chr3:43359400-43374000 Weak transcription Placenta Placenta
34 chr3:43359400-43376600 Weak transcription iPS-20b Cell Line embryonic stem cell
35 chr3:43359600-43363400 Enhancers Liver Liver
36 chr3:43359600-43364600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr3:43359600-43366200 Weak transcription Brain Substantia Nigra brain
38 chr3:43359600-43367000 Weak transcription Fetal Intestine Large intestine
39 chr3:43359600-43367200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr3:43359600-43367200 Weak transcription Duodenum Mucosa Duodenum
41 chr3:43359600-43367200 Weak transcription Fetal Heart heart
42 chr3:43359600-43367400 Weak transcription Fetal Stomach stomach
43 chr3:43359600-43367400 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr3:43359600-43367800 Weak transcription Brain Anterior Caudate brain
45 chr3:43359600-43371800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr3:43359600-43372000 Weak transcription NHLF lung
47 chr3:43359600-43372200 Weak transcription HSMM muscle
48 chr3:43359600-43375400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr3:43359600-43376200 Weak transcription H1 Cell Line embryonic stem cell
50 chr3:43359800-43363000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015