The 2.0 version of rSNPBase

Variant report

Variant rs17075555
Chromosome Location chr3:43358922-43358923
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:43330800-43359000 Weak transcription Fetal Brain Male brain
2 chr3:43332400-43361600 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr3:43332800-43377000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr3:43340200-43359000 Weak transcription Brain Cingulate Gyrus brain
5 chr3:43340200-43361200 Weak transcription Brain Inferior Temporal Lobe brain
6 chr3:43340600-43359200 Weak transcription Gastric stomach
7 chr3:43340600-43365600 Weak transcription Esophagus oesophagus
8 chr3:43341000-43359000 Weak transcription Spleen Spleen
9 chr3:43342000-43359200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr3:43344600-43359400 Strong transcription Primary monocytes fromperipheralblood blood
11 chr3:43345000-43368200 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr3:43345400-43359000 Weak transcription Fetal Kidney kidney
13 chr3:43345400-43367400 Weak transcription Rectal Smooth Muscle rectum
14 chr3:43345600-43360200 Weak transcription Brain Germinal Matrix brain
15 chr3:43345600-43364400 Weak transcription HMEC breast
16 chr3:43346000-43359000 Weak transcription NHLF lung
17 chr3:43346000-43359200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr3:43346000-43359200 Weak transcription Ovary ovary
19 chr3:43346000-43377000 Weak transcription K562 blood
20 chr3:43346400-43359000 Weak transcription Fetal Heart heart
21 chr3:43346400-43367200 Weak transcription Fetal Lung lung
22 chr3:43348400-43378800 Weak transcription Hela-S3 cervix
23 chr3:43349600-43363200 Weak transcription GM12878-XiMat blood
24 chr3:43350000-43359000 Weak transcription Brain Anterior Caudate brain
25 chr3:43350000-43367400 Weak transcription Aorta Aorta
26 chr3:43350400-43359000 Weak transcription Brain Substantia Nigra brain
27 chr3:43350400-43361000 Weak transcription Fetal Brain Female brain
28 chr3:43350400-43365800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr3:43350600-43359600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr3:43351000-43375600 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr3:43351600-43359600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr3:43352600-43363200 Enhancers Primary T killer naive cells fromperipheralblood blood
33 chr3:43353000-43361600 Weak transcription Primary hematopoietic stem cells blood
34 chr3:43353000-43374000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr3:43353200-43359000 Weak transcription Fetal Muscle Trunk muscle
36 chr3:43353200-43359000 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr3:43353200-43359000 Weak transcription Right Atrium heart
38 chr3:43353200-43359200 Weak transcription Primary B cells from cord blood blood
39 chr3:43353200-43367400 Weak transcription Dnd41 blood
40 chr3:43353400-43375200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr3:43354400-43369600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr3:43355000-43364600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr3:43355800-43360400 Genic enhancers HUVEC blood vessel
44 chr3:43356000-43360200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
45 chr3:43356000-43362200 Enhancers Primary T helper naive cells fromperipheralblood blood
46 chr3:43356000-43362200 Enhancers Primary T killer memory cells from peripheral blood blood
47 chr3:43356200-43359800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
48 chr3:43356200-43362800 Enhancers Primary T helper cells PMA-I stimulated --
49 chr3:43356400-43359000 Weak transcription Primary neutrophils fromperipheralblood blood
50 chr3:43356400-43359400 Enhancers Small Intestine intestine

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Last update: Aug 31, 2015