Variant report

Variant	rs41321344
Chromosome Location	chr3:43324599-43324600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43323229..43324773-chr3:43328075..43329606,2	K562	blood:

Variant related genes	Relation type
ENSG00000163788	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs17075422	1.00[AMR][1000 genomes]
rs17075424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075540	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075564	0.97[AFR][1000 genomes]
rs17075568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075581	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075624	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075696	0.85[AFR][1000 genomes]
rs17075709	0.90[AFR][1000 genomes]
rs17254716	1.00[AMR][1000 genomes]
rs17320381	1.00[AMR][1000 genomes]
rs17405728	1.00[AMR][1000 genomes]
rs17406148	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17406718	0.97[AFR][1000 genomes]
rs17472888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036617	1.00[AFR][1000 genomes]
rs2086652	0.90[AFR][1000 genomes]
rs34343482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34730190	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4368477	0.90[AFR][1000 genomes]
rs55694436	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727302	1.00[AMR][1000 genomes]
rs55730605	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55760455	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55765643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55786717	0.85[AFR][1000 genomes]
rs55804512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55837468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55864645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55887904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55908419	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55915337	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55919732	0.85[AFR][1000 genomes]
rs55951861	1.00[AMR][1000 genomes]
rs55957435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56209592	0.90[AFR][1000 genomes]
rs56225070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56282728	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56285372	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56286131	1.00[AMR][1000 genomes]
rs56388016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56395291	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56659864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56741341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56849726	0.90[AFR][1000 genomes]
rs57019763	1.00[AMR][1000 genomes]
rs57020473	1.00[AMR][1000 genomes]
rs57147822	0.85[AFR][1000 genomes]
rs57376786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58066802	0.90[AFR][1000 genomes]
rs58158782	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58209397	1.00[AMR][1000 genomes]
rs58216554	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58508138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58636339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58866653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59113361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59121457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59276993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59433561	0.90[AFR][1000 genomes]
rs59495244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59545985	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59706458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59872395	1.00[AMR][1000 genomes]
rs59930267	1.00[AMR][1000 genomes]
rs60689590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61270592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61375879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61644103	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829182	1.00[AMR][1000 genomes]
rs73829183	1.00[AMR][1000 genomes]
rs73829189	1.00[AMR][1000 genomes]
rs73829191	1.00[AMR][1000 genomes]
rs73831214	1.00[AMR][1000 genomes]
rs73831218	1.00[AMR][1000 genomes]
rs73831224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831226	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831227	1.00[AMR][1000 genomes]
rs73831230	0.94[AFR][1000 genomes]
rs73831232	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831242	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831267	1.00[AFR][1000 genomes]
rs73831271	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831274	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831281	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831285	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831287	0.87[AFR][1000 genomes]
rs73831288	0.90[AFR][1000 genomes]
rs73831291	0.90[AFR][1000 genomes]
rs73831292	0.90[AFR][1000 genomes]
rs73831294	0.90[AFR][1000 genomes]
rs73831295	0.90[AFR][1000 genomes]
rs73831296	0.90[AFR][1000 genomes]
rs73831297	0.90[AFR][1000 genomes]
rs73831301	0.90[AFR][1000 genomes]
rs73832606	0.90[AFR][1000 genomes]
rs73832607	0.85[AFR][1000 genomes]
rs984347	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43318800-43327800	Weak transcription	Small Intestine	intestine
2	chr3:43321200-43325000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:43321600-43327000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:43324000-43327200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:43324400-43325200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:43324400-43325400	Enhancers	HUVEC	blood vessel

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