Variant report

Variant	rs17075574
Chromosome Location	chr3:43381785-43381786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43380042..43383033-chr3:43387015..43389554,2	K562	blood:
2	chr3:43381288..43383537-chr3:43384498..43386662,2	K562	blood:
3	chr3:43369972..43373607-chr3:43380026..43382529,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163788	Chromatin interaction
ENSG00000271941	Chromatin interaction

Extended variants
information (count: 153 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs17075422	1.00[AMR][1000 genomes]
rs17075424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075540	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075564	0.97[AFR][1000 genomes]
rs17075568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075581	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075624	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075696	0.85[AFR][1000 genomes]
rs17075709	0.90[AFR][1000 genomes]
rs17075750	0.85[AFR][1000 genomes]
rs17075757	0.80[YRI][hapmap]
rs17075759	1.00[ASW][hapmap];0.87[LWK][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs17075762	0.85[AFR][1000 genomes]
rs17075773	0.85[AFR][1000 genomes]
rs17075776	0.85[AFR][1000 genomes]
rs17075780	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs17075784	0.85[AFR][1000 genomes]
rs17254716	1.00[AMR][1000 genomes]
rs17320381	1.00[AMR][1000 genomes]
rs17405728	1.00[AMR][1000 genomes]
rs17406148	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17406718	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17472888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036617	1.00[AFR][1000 genomes]
rs2086652	0.90[AFR][1000 genomes]
rs34343482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34730190	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41321344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4368477	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs55694436	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727302	1.00[AMR][1000 genomes]
rs55730605	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55760455	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55765643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55786717	0.85[AFR][1000 genomes]
rs55804512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55823043	0.85[AFR][1000 genomes]
rs55837468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55864645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55887904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55908419	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55915337	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55919732	0.85[AFR][1000 genomes]
rs55951861	1.00[AMR][1000 genomes]
rs55957435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56209592	0.90[AFR][1000 genomes]
rs56225070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56282728	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56285372	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56286131	1.00[AMR][1000 genomes]
rs56388016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56395291	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56659864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56741341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56849726	0.90[AFR][1000 genomes]
rs57019763	1.00[AMR][1000 genomes]
rs57020473	1.00[AMR][1000 genomes]
rs57147822	0.85[AFR][1000 genomes]
rs57376786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58066802	0.90[AFR][1000 genomes]
rs58158782	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58209397	1.00[AMR][1000 genomes]
rs58216554	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58508138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58636339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58694029	0.85[AFR][1000 genomes]
rs58866653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59113361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59121457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59276993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59433561	0.90[AFR][1000 genomes]
rs59495244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59545985	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59706458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59872395	1.00[AMR][1000 genomes]
rs59930267	1.00[AMR][1000 genomes]
rs60689590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60754038	0.85[AFR][1000 genomes]
rs61270592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61375879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61644103	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6799735	1.00[YRI][hapmap]
rs73829182	1.00[AMR][1000 genomes]
rs73829183	1.00[AMR][1000 genomes]
rs73829189	1.00[AMR][1000 genomes]
rs73829191	1.00[AMR][1000 genomes]
rs73831214	1.00[AMR][1000 genomes]
rs73831218	1.00[AMR][1000 genomes]
rs73831224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831226	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831227	1.00[AMR][1000 genomes]
rs73831230	0.94[AFR][1000 genomes]
rs73831232	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831242	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831267	1.00[AFR][1000 genomes]
rs73831271	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831274	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831281	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831285	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831287	0.87[AFR][1000 genomes]
rs73831288	0.90[AFR][1000 genomes]
rs73831291	0.90[AFR][1000 genomes]
rs73831292	0.90[AFR][1000 genomes]
rs73831294	0.90[AFR][1000 genomes]
rs73831295	0.90[AFR][1000 genomes]
rs73831296	0.90[AFR][1000 genomes]
rs73831297	0.90[AFR][1000 genomes]
rs73831301	0.90[AFR][1000 genomes]
rs73832606	0.90[AFR][1000 genomes]
rs73832607	0.85[AFR][1000 genomes]
rs73832614	0.85[AFR][1000 genomes]
rs73832616	0.85[AFR][1000 genomes]
rs73832620	0.85[AFR][1000 genomes]
rs73832622	0.85[AFR][1000 genomes]
rs984347	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17075574	ANO10	cis	lymphoblastoid	seeQTL
rs17075574	FLJ10375	cis	multi-tissue	Pritchard
rs17075574	GZMM	trans	lymphoblastoid	seeQTL
rs17075574	TMEM16K	cis	multi-tissue	Pritchard

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43373800-43383400	Strong transcription	HUVEC	blood vessel
3	chr3:43374000-43383400	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:43374400-43385000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:43375200-43382000	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr3:43375600-43382000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr3:43375800-43382200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr3:43375800-43382600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:43376200-43382200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:43376600-43382000	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr3:43376600-43382000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr3:43376600-43382200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr3:43376600-43382400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:43377000-43382000	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chr3:43377000-43385800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:43377200-43382000	ZNF genes & repeats	Fetal Kidney	kidney
17	chr3:43379000-43385400	Strong transcription	Placenta Amnion	Placenta Amnion
18	chr3:43379400-43381800	Weak transcription	Aorta	Aorta
19	chr3:43379600-43381800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:43379600-43381800	Weak transcription	Esophagus	oesophagus
21	chr3:43379600-43381800	Weak transcription	Gastric	stomach
22	chr3:43379600-43381800	Weak transcription	Ovary	ovary
23	chr3:43379600-43381800	Weak transcription	Pancreas	Pancrea
24	chr3:43379600-43381800	Weak transcription	Right Ventricle	heart
25	chr3:43379600-43383200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:43379600-43383400	Strong transcription	Fetal Thymus	thymus
27	chr3:43379600-43392800	Strong transcription	Placenta	Placenta
28	chr3:43379800-43383600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:43380000-43381800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:43380000-43383800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:43380000-43385200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:43380000-43387400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:43380000-43387600	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr3:43380000-43392200	Strong transcription	HepG2	liver
35	chr3:43380000-43392800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:43380200-43381800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr3:43380200-43381800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:43380200-43381800	Weak transcription	Brain Substantia Nigra	brain
39	chr3:43380200-43381800	Weak transcription	Colonic Mucosa	Colon
40	chr3:43380200-43381800	Weak transcription	HSMMtube	muscle
41	chr3:43380200-43386200	Strong transcription	Fetal Lung	lung
42	chr3:43380200-43386800	Strong transcription	HSMM	muscle
43	chr3:43380400-43382200	Strong transcription	Small Intestine	intestine
44	chr3:43380600-43382200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr3:43380600-43382400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:43380600-43383000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:43380600-43383400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr3:43380600-43383400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:43380600-43385200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr3:43380600-43385800	Strong transcription	Lung	lung

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