Variant report

Variant	rs73831230
Chromosome Location	chr3:43321056-43321057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43318026..43323143-chr3:43324896..43329245,5	K562	blood:
2	chr3:43320796..43322949-chr3:43328990..43330664,2	K562	blood:
3	chr3:43320372..43321939-chr3:43325743..43328701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163788	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs17075422	0.81[AFR][1000 genomes]
rs17075424	0.88[AFR][1000 genomes]
rs17075519	0.90[AFR][1000 genomes]
rs17075525	0.90[AFR][1000 genomes]
rs17075540	0.90[AFR][1000 genomes]
rs17075545	0.94[AFR][1000 genomes]
rs17075555	0.94[AFR][1000 genomes]
rs17075561	0.94[AFR][1000 genomes]
rs17075563	0.94[AFR][1000 genomes]
rs17075564	0.91[AFR][1000 genomes]
rs17075568	0.94[AFR][1000 genomes]
rs17075570	0.94[AFR][1000 genomes]
rs17075574	0.94[AFR][1000 genomes]
rs17075581	0.83[AFR][1000 genomes]
rs17075587	0.94[AFR][1000 genomes]
rs17075614	0.91[AFR][1000 genomes]
rs17075617	0.85[AFR][1000 genomes]
rs17075623	0.91[AFR][1000 genomes]
rs17075624	0.91[AFR][1000 genomes]
rs17075709	0.84[AFR][1000 genomes]
rs17406148	0.83[AFR][1000 genomes]
rs17406718	0.91[AFR][1000 genomes]
rs17472888	0.83[AFR][1000 genomes]
rs2036617	0.94[AFR][1000 genomes]
rs2086652	0.84[AFR][1000 genomes]
rs34343482	0.91[AFR][1000 genomes]
rs34730190	0.83[AFR][1000 genomes]
rs41321344	0.94[AFR][1000 genomes]
rs4368477	0.84[AFR][1000 genomes]
rs55694436	0.88[AFR][1000 genomes]
rs55730605	0.83[AFR][1000 genomes]
rs55760455	0.91[AFR][1000 genomes]
rs55765643	0.94[AFR][1000 genomes]
rs55804512	0.94[AFR][1000 genomes]
rs55837468	0.94[AFR][1000 genomes]
rs55864645	0.94[AFR][1000 genomes]
rs55887904	0.94[AFR][1000 genomes]
rs55908419	1.00[AFR][1000 genomes]
rs55915337	0.83[AFR][1000 genomes]
rs55957435	0.94[AFR][1000 genomes]
rs56100043	0.94[AFR][1000 genomes]
rs56209592	0.84[AFR][1000 genomes]
rs56225070	0.94[AFR][1000 genomes]
rs56282728	0.91[AFR][1000 genomes]
rs56285372	0.84[AFR][1000 genomes]
rs56388016	0.94[AFR][1000 genomes]
rs56395291	0.85[AFR][1000 genomes]
rs56659864	0.94[AFR][1000 genomes]
rs56741341	0.94[AFR][1000 genomes]
rs56849726	0.84[AFR][1000 genomes]
rs57376786	0.94[AFR][1000 genomes]
rs58066802	0.84[AFR][1000 genomes]
rs58158782	0.91[AFR][1000 genomes]
rs58216554	0.91[AFR][1000 genomes]
rs58508138	0.94[AFR][1000 genomes]
rs58636339	0.94[AFR][1000 genomes]
rs58866653	0.94[AFR][1000 genomes]
rs59113361	0.81[AFR][1000 genomes]
rs59121457	0.91[AFR][1000 genomes]
rs59276993	1.00[AFR][1000 genomes]
rs59433561	0.84[AFR][1000 genomes]
rs59495244	0.81[AFR][1000 genomes]
rs59545985	0.94[AFR][1000 genomes]
rs59706458	0.94[AFR][1000 genomes]
rs60689590	0.94[AFR][1000 genomes]
rs61270592	0.94[AFR][1000 genomes]
rs61375879	0.94[AFR][1000 genomes]
rs61644103	0.94[AFR][1000 genomes]
rs73831224	1.00[AFR][1000 genomes]
rs73831226	0.88[AFR][1000 genomes]
rs73831227	0.84[AFR][1000 genomes]
rs73831232	0.83[AFR][1000 genomes]
rs73831233	0.94[AFR][1000 genomes]
rs73831234	0.94[AFR][1000 genomes]
rs73831236	0.94[AFR][1000 genomes]
rs73831237	0.94[AFR][1000 genomes]
rs73831238	0.94[AFR][1000 genomes]
rs73831239	0.94[AFR][1000 genomes]
rs73831240	0.94[AFR][1000 genomes]
rs73831241	0.94[AFR][1000 genomes]
rs73831242	0.83[AFR][1000 genomes]
rs73831243	0.94[AFR][1000 genomes]
rs73831244	0.94[AFR][1000 genomes]
rs73831245	0.94[AFR][1000 genomes]
rs73831247	0.94[AFR][1000 genomes]
rs73831248	0.94[AFR][1000 genomes]
rs73831249	0.94[AFR][1000 genomes]
rs73831250	0.94[AFR][1000 genomes]
rs73831251	0.94[AFR][1000 genomes]
rs73831252	0.94[AFR][1000 genomes]
rs73831253	0.94[AFR][1000 genomes]
rs73831256	0.88[AFR][1000 genomes]
rs73831261	0.94[AFR][1000 genomes]
rs73831267	0.94[AFR][1000 genomes]
rs73831271	0.80[AFR][1000 genomes]
rs73831273	0.91[AFR][1000 genomes]
rs73831274	0.91[AFR][1000 genomes]
rs73831275	0.91[AFR][1000 genomes]
rs73831277	0.84[AFR][1000 genomes]
rs73831279	0.85[AFR][1000 genomes]
rs73831280	0.91[AFR][1000 genomes]
rs73831281	0.91[AFR][1000 genomes]
rs73831283	0.91[AFR][1000 genomes]
rs73831285	0.91[AFR][1000 genomes]
rs73831287	0.81[AFR][1000 genomes]
rs73831288	0.84[AFR][1000 genomes]
rs73831291	0.84[AFR][1000 genomes]
rs73831292	0.84[AFR][1000 genomes]
rs73831294	0.84[AFR][1000 genomes]
rs73831295	0.84[AFR][1000 genomes]
rs73831296	0.84[AFR][1000 genomes]
rs73831297	0.84[AFR][1000 genomes]
rs73831301	0.84[AFR][1000 genomes]
rs73832606	0.84[AFR][1000 genomes]
rs984347	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43318800-43327800	Weak transcription	Small Intestine	intestine
2	chr3:43320800-43321200	Enhancers	GM12878-XiMat	blood

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