The 2.0 version of rSNPBase

Variant report

Variant rs58066802
Chromosome Location chr3:43428686-43428687
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:43391600-43436000 Weak transcription Colonic Mucosa Colon
2 chr3:43408600-43431200 Weak transcription Duodenum Mucosa Duodenum
3 chr3:43408800-43429800 Weak transcription Right Ventricle heart
4 chr3:43408800-43431000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr3:43420400-43428800 Weak transcription Thymus Thymus
6 chr3:43420400-43429200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr3:43420400-43429600 Weak transcription Psoas Muscle Psoas
8 chr3:43420400-43431000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr3:43420800-43429600 Weak transcription HSMMtube muscle
10 chr3:43421200-43429200 Weak transcription Left Ventricle heart
11 chr3:43421200-43431400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr3:43421200-43431600 Weak transcription Brain Inferior Temporal Lobe brain
13 chr3:43421400-43430800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr3:43421400-43436200 Weak transcription Stomach Smooth Muscle stomach
15 chr3:43421400-43454800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr3:43425200-43429400 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr3:43427200-43432000 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr3:43427400-43429600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr3:43427400-43430400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr3:43427400-43430600 Enhancers Primary neutrophils fromperipheralblood blood
21 chr3:43427400-43430800 Enhancers Primary T cells from cord blood blood
22 chr3:43427400-43430800 Enhancers Primary T killer memory cells from peripheral blood blood
23 chr3:43427400-43431000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
24 chr3:43427400-43433400 Enhancers Primary T cells fromperipheralblood blood
25 chr3:43427600-43428800 Enhancers H9 Cell Line embryonic stem cell
26 chr3:43427600-43428800 Enhancers iPS-18 Cell Line embryonic stem cell
27 chr3:43427800-43428800 Enhancers ES-I3 Cell Line embryonic stem cell
28 chr3:43427800-43430000 Enhancers Spleen Spleen
29 chr3:43428000-43428800 Enhancers H1 Cell Line embryonic stem cell
30 chr3:43428000-43428800 Weak transcription HUVEC blood vessel
31 chr3:43428000-43429000 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
32 chr3:43428000-43429200 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr3:43428000-43430000 Enhancers Pancreas Pancrea
34 chr3:43428200-43428800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr3:43428200-43430200 Enhancers Fetal Muscle Leg muscle
36 chr3:43428200-43430400 Enhancers Primary T helper cells PMA-I stimulated --
37 chr3:43428200-43430800 Enhancers Primary T helper 17 cells PMA-I stimulated --
38 chr3:43428200-43433200 Enhancers Primary T helper cells fromperipheralblood blood
39 chr3:43428400-43429000 Weak transcription Fetal Muscle Trunk muscle
40 chr3:43428400-43429400 Enhancers Sigmoid Colon Sigmoid Colon
41 chr3:43428400-43430000 Enhancers Lung lung
42 chr3:43428400-43431200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr3:43428400-43436400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr3:43428400-43441800 Weak transcription Fetal Stomach stomach
45 chr3:43428600-43430800 Enhancers Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015