The 2.0 version of rSNPBase

Variant report

Variant rs55919732
Chromosome Location chr3:43553394-43553395
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:43504800-43553400 Weak transcription Duodenum Mucosa Duodenum
2 chr3:43526000-43560800 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr3:43527200-43560200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr3:43539200-43575000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr3:43539600-43558800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr3:43539800-43553800 Weak transcription HSMMtube muscle
7 chr3:43540000-43554200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr3:43540000-43554400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr3:43540000-43556600 Weak transcription Fetal Intestine Small intestine
10 chr3:43540000-43582000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr3:43540200-43554000 Weak transcription Muscle Satellite Cultured Cells --
12 chr3:43540200-43559000 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr3:43540200-43564600 Weak transcription NHEK skin
14 chr3:43540200-43602200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr3:43540600-43560800 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr3:43540800-43554200 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr3:43540800-43559200 Weak transcription Fetal Muscle Leg muscle
18 chr3:43541600-43559000 Weak transcription Adipose Nuclei Adipose
19 chr3:43541800-43558600 Weak transcription Aorta Aorta
20 chr3:43542000-43559000 Weak transcription Monocytes-CD14+_RO01746 blood
21 chr3:43542800-43588800 Weak transcription Left Ventricle heart
22 chr3:43544000-43617600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr3:43544200-43554000 Weak transcription HSMM muscle
24 chr3:43544200-43558200 Weak transcription Lung lung
25 chr3:43544200-43558600 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr3:43544400-43560200 Weak transcription Primary neutrophils fromperipheralblood blood
27 chr3:43545200-43559200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr3:43545200-43560200 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr3:43546400-43561000 Weak transcription Stomach Smooth Muscle stomach
30 chr3:43547200-43553800 Weak transcription NHLF lung
31 chr3:43547200-43554000 Weak transcription Osteobl bone
32 chr3:43547200-43567200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr3:43547400-43560800 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr3:43547600-43595800 Weak transcription Fetal Stomach stomach
35 chr3:43548200-43554200 Weak transcription Fetal Muscle Trunk muscle
36 chr3:43548400-43559000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr3:43548400-43559000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr3:43548400-43559200 Weak transcription Primary hematopoietic stem cells blood
39 chr3:43549000-43556200 Weak transcription Esophagus oesophagus
40 chr3:43549000-43561200 Weak transcription Right Ventricle heart
41 chr3:43549200-43554400 Weak transcription K562 blood
42 chr3:43549200-43557400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr3:43551000-43562600 Weak transcription HUVEC blood vessel
44 chr3:43551000-43577800 Weak transcription H1 Cell Line embryonic stem cell
45 chr3:43551200-43554000 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr3:43551200-43560800 Weak transcription Fetal Heart heart
47 chr3:43551400-43553800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr3:43552000-43564200 Weak transcription Gastric stomach
49 chr3:43552200-43555400 Weak transcription Brain Anterior Caudate brain
50 chr3:43552800-43554800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015