Variant report

Variant	rs73831267
Chromosome Location	chr3:43392788-43392789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43389522-43394326	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:43392586-43393016	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr3:43392666-43392812	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr3:43392481-43394283	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr3:43392434-43394122	K562	blood:	n/a	n/a
6	POLR2A	chr3:43392433-43392858	HUVEC	blood vessel:	n/a	n/a
7	POLR2A	chr3:43392368-43393004	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43390162..43392791-chr3:43393918..43397440,3	K562	blood:

Variant related genes	Relation type
ENSG00000271941	TF binding region

rs_ID	r²[population]
rs17075424	0.83[AFR][1000 genomes]
rs17075519	0.97[AFR][1000 genomes]
rs17075525	0.97[AFR][1000 genomes]
rs17075540	0.97[AFR][1000 genomes]
rs17075545	1.00[AFR][1000 genomes]
rs17075555	1.00[AFR][1000 genomes]
rs17075561	1.00[AFR][1000 genomes]
rs17075563	1.00[AFR][1000 genomes]
rs17075564	0.97[AFR][1000 genomes]
rs17075568	1.00[AFR][1000 genomes]
rs17075570	1.00[AFR][1000 genomes]
rs17075574	1.00[AFR][1000 genomes]
rs17075581	0.88[AFR][1000 genomes]
rs17075587	1.00[AFR][1000 genomes]
rs17075614	0.97[AFR][1000 genomes]
rs17075617	0.91[AFR][1000 genomes]
rs17075623	0.97[AFR][1000 genomes]
rs17075624	0.97[AFR][1000 genomes]
rs17075696	0.85[AFR][1000 genomes]
rs17075709	0.90[AFR][1000 genomes]
rs17075750	0.85[AFR][1000 genomes]
rs17075759	0.85[AFR][1000 genomes]
rs17075762	0.85[AFR][1000 genomes]
rs17075773	0.85[AFR][1000 genomes]
rs17075776	0.85[AFR][1000 genomes]
rs17075780	0.85[AFR][1000 genomes]
rs17075784	0.85[AFR][1000 genomes]
rs17406148	0.88[AFR][1000 genomes]
rs17406718	0.97[AFR][1000 genomes]
rs17472888	0.88[AFR][1000 genomes]
rs2036617	1.00[AFR][1000 genomes]
rs2086652	0.90[AFR][1000 genomes]
rs34343482	0.97[AFR][1000 genomes]
rs34730190	0.88[AFR][1000 genomes]
rs41321344	1.00[AFR][1000 genomes]
rs4368477	0.90[AFR][1000 genomes]
rs55694436	0.83[AFR][1000 genomes]
rs55730605	0.88[AFR][1000 genomes]
rs55760455	0.97[AFR][1000 genomes]
rs55765643	1.00[AFR][1000 genomes]
rs55786717	0.85[AFR][1000 genomes]
rs55804512	1.00[AFR][1000 genomes]
rs55823043	0.85[AFR][1000 genomes]
rs55837468	1.00[AFR][1000 genomes]
rs55864645	1.00[AFR][1000 genomes]
rs55887904	1.00[AFR][1000 genomes]
rs55908419	0.94[AFR][1000 genomes]
rs55915337	0.88[AFR][1000 genomes]
rs55919732	0.85[AFR][1000 genomes]
rs55957435	1.00[AFR][1000 genomes]
rs56100043	1.00[AFR][1000 genomes]
rs56209592	0.90[AFR][1000 genomes]
rs56225070	1.00[AFR][1000 genomes]
rs56282728	0.97[AFR][1000 genomes]
rs56285372	0.90[AFR][1000 genomes]
rs56388016	1.00[AFR][1000 genomes]
rs56395291	0.91[AFR][1000 genomes]
rs56659864	1.00[AFR][1000 genomes]
rs56741341	1.00[AFR][1000 genomes]
rs56849726	0.90[AFR][1000 genomes]
rs57147822	0.85[AFR][1000 genomes]
rs57376786	1.00[AFR][1000 genomes]
rs58066802	0.90[AFR][1000 genomes]
rs58158782	0.97[AFR][1000 genomes]
rs58216554	0.97[AFR][1000 genomes]
rs58508138	1.00[AFR][1000 genomes]
rs58636339	1.00[AFR][1000 genomes]
rs58694029	0.85[AFR][1000 genomes]
rs58866653	1.00[AFR][1000 genomes]
rs59113361	0.87[AFR][1000 genomes]
rs59121457	0.97[AFR][1000 genomes]
rs59276993	0.94[AFR][1000 genomes]
rs59433561	0.90[AFR][1000 genomes]
rs59495244	0.87[AFR][1000 genomes]
rs59545985	0.88[AFR][1000 genomes]
rs59706458	1.00[AFR][1000 genomes]
rs60689590	1.00[AFR][1000 genomes]
rs60754038	0.85[AFR][1000 genomes]
rs61270592	1.00[AFR][1000 genomes]
rs61375879	1.00[AFR][1000 genomes]
rs61644103	0.88[AFR][1000 genomes]
rs73831224	0.94[AFR][1000 genomes]
rs73831226	0.83[AFR][1000 genomes]
rs73831230	0.94[AFR][1000 genomes]
rs73831232	0.88[AFR][1000 genomes]
rs73831233	1.00[AFR][1000 genomes]
rs73831234	1.00[AFR][1000 genomes]
rs73831236	1.00[AFR][1000 genomes]
rs73831237	1.00[AFR][1000 genomes]
rs73831238	1.00[AFR][1000 genomes]
rs73831239	1.00[AFR][1000 genomes]
rs73831240	1.00[AFR][1000 genomes]
rs73831241	1.00[AFR][1000 genomes]
rs73831242	0.88[AFR][1000 genomes]
rs73831243	1.00[AFR][1000 genomes]
rs73831244	1.00[AFR][1000 genomes]
rs73831245	1.00[AFR][1000 genomes]
rs73831247	1.00[AFR][1000 genomes]
rs73831248	1.00[AFR][1000 genomes]
rs73831249	1.00[AFR][1000 genomes]
rs73831250	1.00[AFR][1000 genomes]
rs73831251	1.00[AFR][1000 genomes]
rs73831252	1.00[AFR][1000 genomes]
rs73831253	1.00[AFR][1000 genomes]
rs73831256	0.94[AFR][1000 genomes]
rs73831261	1.00[AFR][1000 genomes]
rs73831271	0.86[AFR][1000 genomes]
rs73831273	0.97[AFR][1000 genomes]
rs73831274	0.97[AFR][1000 genomes]
rs73831275	0.97[AFR][1000 genomes]
rs73831277	0.90[AFR][1000 genomes]
rs73831279	0.91[AFR][1000 genomes]
rs73831280	0.97[AFR][1000 genomes]
rs73831281	0.97[AFR][1000 genomes]
rs73831283	0.97[AFR][1000 genomes]
rs73831285	0.97[AFR][1000 genomes]
rs73831287	0.87[AFR][1000 genomes]
rs73831288	0.90[AFR][1000 genomes]
rs73831291	0.90[AFR][1000 genomes]
rs73831292	0.90[AFR][1000 genomes]
rs73831294	0.90[AFR][1000 genomes]
rs73831295	0.90[AFR][1000 genomes]
rs73831296	0.90[AFR][1000 genomes]
rs73831297	0.90[AFR][1000 genomes]
rs73831301	0.90[AFR][1000 genomes]
rs73832606	0.90[AFR][1000 genomes]
rs73832607	0.85[AFR][1000 genomes]
rs73832614	0.85[AFR][1000 genomes]
rs73832616	0.85[AFR][1000 genomes]
rs73832620	0.85[AFR][1000 genomes]
rs73832622	0.85[AFR][1000 genomes]
rs984347	0.91[AFR][1000 genomes]

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43379600-43392800	Strong transcription	Placenta	Placenta
3	chr3:43380000-43392800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:43380800-43392800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:43380800-43392800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:43380800-43393000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:43380800-43393200	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:43381000-43392800	Weak transcription	Fetal Brain Male	brain
9	chr3:43381000-43393800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:43381000-43396400	Weak transcription	Stomach Mucosa	stomach
11	chr3:43381200-43392800	Strong transcription	Fetal Intestine Large	intestine
12	chr3:43381400-43392800	Strong transcription	Duodenum Mucosa	Duodenum
13	chr3:43381400-43393000	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr3:43381800-43392800	Strong transcription	Brain Germinal Matrix	brain
15	chr3:43382000-43393400	Strong transcription	Primary B cells from cord blood	blood
16	chr3:43382400-43395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:43382600-43392800	Strong transcription	Liver	Liver
18	chr3:43384200-43394000	Weak transcription	Fetal Heart	heart
19	chr3:43385200-43396800	Weak transcription	Ovary	ovary
20	chr3:43385800-43392800	Strong transcription	HUVEC	blood vessel
21	chr3:43385800-43402000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:43386000-43392800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:43387200-43392800	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:43387200-43394000	Weak transcription	Small Intestine	intestine
25	chr3:43387600-43402600	Weak transcription	Right Atrium	heart
26	chr3:43388000-43392800	Strong transcription	Adipose Nuclei	Adipose
27	chr3:43388200-43392800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:43388400-43392800	Strong transcription	Osteobl	bone
29	chr3:43388400-43393000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr3:43388600-43393000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:43388600-43393200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:43388600-43393400	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr3:43388800-43393000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr3:43388800-43393200	Strong transcription	Fetal Lung	lung
35	chr3:43389200-43392800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:43389200-43400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr3:43389800-43393000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr3:43390000-43393200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr3:43390000-43393200	Weak transcription	Psoas Muscle	Psoas
40	chr3:43390000-43393600	Weak transcription	Hela-S3	cervix
41	chr3:43390200-43393200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:43390600-43392800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr3:43390600-43392800	Weak transcription	Pancreas	Pancrea
44	chr3:43390600-43393000	Weak transcription	NH-A	brain
45	chr3:43390600-43393200	Weak transcription	Brain Angular Gyrus	brain
46	chr3:43390600-43393400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr3:43390600-43394400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr3:43390600-43394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr3:43390600-43394800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr3:43390600-43403600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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