Variant report

Variant	rs73832614
Chromosome Location	chr3:43573504-43573505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43566672..43569454-chr3:43572635..43574771,2	K562	blood:
2	chr3:43569111..43571884-chr3:43573106..43575058,2	K562	blood:
3	chr3:43572398..43575249-chr3:43575925..43579608,3	K562	blood:
4	chr3:43562365..43565525-chr3:43571764..43575100,3	K562	blood:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs17075519	0.88[AFR][1000 genomes]
rs17075525	0.88[AFR][1000 genomes]
rs17075540	0.88[AFR][1000 genomes]
rs17075545	0.85[AFR][1000 genomes]
rs17075555	0.85[AFR][1000 genomes]
rs17075561	0.85[AFR][1000 genomes]
rs17075563	0.85[AFR][1000 genomes]
rs17075564	0.82[AFR][1000 genomes]
rs17075568	0.85[AFR][1000 genomes]
rs17075570	0.85[AFR][1000 genomes]
rs17075574	0.85[AFR][1000 genomes]
rs17075587	0.85[AFR][1000 genomes]
rs17075614	0.82[AFR][1000 genomes]
rs17075623	0.82[AFR][1000 genomes]
rs17075624	0.82[AFR][1000 genomes]
rs17075696	0.88[AFR][1000 genomes]
rs17075709	0.94[AFR][1000 genomes]
rs17075750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075757	1.00[AMR][1000 genomes]
rs17075759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17406718	0.82[AFR][1000 genomes]
rs2036617	0.85[AFR][1000 genomes]
rs2086652	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34343482	0.82[AFR][1000 genomes]
rs4368477	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55692701	0.94[AFR][1000 genomes]
rs55760455	0.82[AFR][1000 genomes]
rs55765643	0.85[AFR][1000 genomes]
rs55823043	1.00[AFR][1000 genomes]
rs55864645	0.85[AFR][1000 genomes]
rs55887904	0.85[AFR][1000 genomes]
rs55919732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55969335	1.00[AFR][1000 genomes]
rs56100043	0.85[AFR][1000 genomes]
rs56209592	0.94[AFR][1000 genomes]
rs56225070	0.85[AFR][1000 genomes]
rs56282728	0.82[AFR][1000 genomes]
rs56285372	0.81[AFR][1000 genomes]
rs56659864	0.85[AFR][1000 genomes]
rs56741341	0.85[AFR][1000 genomes]
rs56849726	0.94[AFR][1000 genomes]
rs57147822	0.88[AFR][1000 genomes]
rs57376786	0.85[AFR][1000 genomes]
rs58066802	0.94[AFR][1000 genomes]
rs58158782	0.82[AFR][1000 genomes]
rs58216554	0.82[AFR][1000 genomes]
rs58310281	1.00[AFR][1000 genomes]
rs58636339	0.85[AFR][1000 genomes]
rs58694029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59113361	0.91[AFR][1000 genomes]
rs59121457	0.82[AFR][1000 genomes]
rs59423218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59433561	0.94[AFR][1000 genomes]
rs59495244	0.91[AFR][1000 genomes]
rs59706458	0.85[AFR][1000 genomes]
rs60689590	0.85[AFR][1000 genomes]
rs60754038	1.00[AFR][1000 genomes]
rs61270592	0.85[AFR][1000 genomes]
rs61304871	1.00[AMR][1000 genomes]
rs61375879	0.85[AFR][1000 genomes]
rs6799735	1.00[AMR][1000 genomes]
rs72866848	1.00[ASN][1000 genomes]
rs73829503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831245	0.85[AFR][1000 genomes]
rs73831247	0.85[AFR][1000 genomes]
rs73831248	0.85[AFR][1000 genomes]
rs73831249	0.85[AFR][1000 genomes]
rs73831250	0.85[AFR][1000 genomes]
rs73831251	0.85[AFR][1000 genomes]
rs73831252	0.85[AFR][1000 genomes]
rs73831253	0.85[AFR][1000 genomes]
rs73831261	0.85[AFR][1000 genomes]
rs73831267	0.85[AFR][1000 genomes]
rs73831273	0.82[AFR][1000 genomes]
rs73831274	0.82[AFR][1000 genomes]
rs73831275	0.82[AFR][1000 genomes]
rs73831280	0.82[AFR][1000 genomes]
rs73831281	0.82[AFR][1000 genomes]
rs73831283	0.82[AFR][1000 genomes]
rs73831285	0.82[AFR][1000 genomes]
rs73831287	0.91[AFR][1000 genomes]
rs73831288	0.94[AFR][1000 genomes]
rs73831291	0.94[AFR][1000 genomes]
rs73831292	0.94[AFR][1000 genomes]
rs73831294	0.94[AFR][1000 genomes]
rs73831295	0.94[AFR][1000 genomes]
rs73831296	0.94[AFR][1000 genomes]
rs73831297	0.94[AFR][1000 genomes]
rs73831301	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832606	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832612	1.00[AMR][1000 genomes]
rs73832616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832620	1.00[AFR][1000 genomes]
rs73832622	1.00[AFR][1000 genomes]
rs73832625	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7649808	1.00[AMR][1000 genomes]
rs984347	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2763720	chr3:43551038-43575884	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43539200-43575000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:43540000-43582000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:43540200-43602200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:43542800-43588800	Weak transcription	Left Ventricle	heart
5	chr3:43544000-43617600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:43547600-43595800	Weak transcription	Fetal Stomach	stomach
7	chr3:43551000-43577800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:43553000-43601600	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:43553600-43595800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:43554000-43579000	Weak transcription	Fetal Brain Male	brain
11	chr3:43554800-43589400	Weak transcription	HSMMtube	muscle
12	chr3:43556200-43624800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:43557000-43577200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:43558600-43625600	Weak transcription	Lung	lung
15	chr3:43560800-43618000	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:43561200-43601200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:43561400-43600400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:43561600-43588800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:43561600-43589000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:43561600-43590600	Weak transcription	Ovary	ovary
21	chr3:43561600-43601000	Weak transcription	Pancreas	Pancrea
22	chr3:43561800-43590600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:43561800-43602000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr3:43562000-43575800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:43562000-43589200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:43563200-43580000	Weak transcription	HSMM	muscle
27	chr3:43565400-43580000	Weak transcription	Aorta	Aorta
28	chr3:43565400-43583600	Weak transcription	Fetal Intestine Small	intestine
29	chr3:43565600-43576000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:43566600-43577600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:43567000-43583400	Weak transcription	K562	blood
32	chr3:43567200-43583200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr3:43567400-43578600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr3:43568200-43580800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr3:43569600-43587800	Weak transcription	Primary T cells from cord blood	blood
36	chr3:43570200-43580000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr3:43570600-43575800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:43570800-43576000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:43570800-43577200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:43571000-43575800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:43571000-43577400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:43571000-43578800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:43571000-43582000	Weak transcription	Adipose Nuclei	Adipose
44	chr3:43571000-43588000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr3:43571000-43594600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:43571000-43613600	Weak transcription	Gastric	stomach
47	chr3:43571600-43577200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:43572400-43575800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:43573200-43574000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:43573400-43573800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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