Variant report
| Variant | rs17075540 |
|---|---|
| Chromosome Location | chr3:43348810-43348811 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:43330800-43359000 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr3:43331400-43358200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr3:43332400-43361600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 4 | chr3:43332800-43377000 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 5 | chr3:43335400-43351000 | Weak transcription | Fetal Stomach | stomach |
| 6 | chr3:43337000-43354400 | Weak transcription | A549 | lung |
| 7 | chr3:43337400-43358200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 8 | chr3:43339600-43356200 | Strong transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 9 | chr3:43340000-43358600 | Weak transcription | Colonic Mucosa | Colon |
| 10 | chr3:43340200-43359000 | Weak transcription | Brain Cingulate Gyrus | brain |
| 11 | chr3:43340200-43361200 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 12 | chr3:43340400-43358200 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 13 | chr3:43340400-43358200 | Weak transcription | Brain Hippocampus Middle | brain |
| 14 | chr3:43340600-43349200 | Weak transcription | Brain Substantia Nigra | brain |
| 15 | chr3:43340600-43349800 | Weak transcription | Aorta | Aorta |
| 16 | chr3:43340600-43352400 | Weak transcription | Right Ventricle | heart |
| 17 | chr3:43340600-43352400 | Weak transcription | Small Intestine | intestine |
| 18 | chr3:43340600-43358600 | Weak transcription | Brain Angular Gyrus | brain |
| 19 | chr3:43340600-43358800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 20 | chr3:43340600-43358800 | Weak transcription | Colon Smooth Muscle | Colon |
| 21 | chr3:43340600-43359200 | Weak transcription | Gastric | stomach |
| 22 | chr3:43340600-43365600 | Weak transcription | Esophagus | oesophagus |
| 23 | chr3:43341000-43359000 | Weak transcription | Spleen | Spleen |
| 24 | chr3:43342000-43359200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 25 | chr3:43342200-43354600 | Strong transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 26 | chr3:43342600-43355800 | Strong transcription | HUVEC | blood vessel |
| 27 | chr3:43343200-43356400 | Weak transcription | Fetal Intestine Small | intestine |
| 28 | chr3:43343800-43357200 | Strong transcription | Fetal Thymus | thymus |
| 29 | chr3:43344000-43355400 | Strong transcription | Monocytes-CD14+_RO01746 | blood |
| 30 | chr3:43344200-43358200 | Weak transcription | Psoas Muscle | Psoas |
| 31 | chr3:43344600-43349600 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 32 | chr3:43344600-43351600 | Strong transcription | Primary hematopoietic stem cells short term culture | blood |
| 33 | chr3:43344600-43359400 | Strong transcription | Primary monocytes fromperipheralblood | blood |
| 34 | chr3:43344800-43350400 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 35 | chr3:43345000-43368200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 36 | chr3:43345400-43349200 | Weak transcription | Left Ventricle | heart |
| 37 | chr3:43345400-43349800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 38 | chr3:43345400-43351000 | Strong transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 39 | chr3:43345400-43352400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 40 | chr3:43345400-43352600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 41 | chr3:43345400-43354400 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
| 42 | chr3:43345400-43356400 | Weak transcription | Pancreas | Pancrea |
| 43 | chr3:43345400-43358200 | Weak transcription | Lung | lung |
| 44 | chr3:43345400-43359000 | Weak transcription | Fetal Kidney | kidney |
| 45 | chr3:43345400-43367400 | Weak transcription | Rectal Smooth Muscle | rectum |
| 46 | chr3:43345600-43360200 | Weak transcription | Brain Germinal Matrix | brain |
| 47 | chr3:43345600-43364400 | Weak transcription | HMEC | breast |
| 48 | chr3:43345800-43352800 | Weak transcription | HSMMtube | muscle |
| 49 | chr3:43346000-43349000 | Weak transcription | Thymus | Thymus |
| 50 | chr3:43346000-43349200 | Weak transcription | Fetal Muscle Trunk | muscle |
