Variant report

Variant	rs55727302
Chromosome Location	chr3:43272153-43272154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs17075422	1.00[AMR][1000 genomes]
rs17075424	1.00[AMR][1000 genomes]
rs17075519	1.00[AMR][1000 genomes]
rs17075525	1.00[AMR][1000 genomes]
rs17075540	1.00[AMR][1000 genomes]
rs17075545	1.00[AMR][1000 genomes]
rs17075555	1.00[AMR][1000 genomes]
rs17075561	1.00[AMR][1000 genomes]
rs17075563	1.00[AMR][1000 genomes]
rs17075568	1.00[AMR][1000 genomes]
rs17075570	1.00[AMR][1000 genomes]
rs17075574	1.00[AMR][1000 genomes]
rs17075581	1.00[AMR][1000 genomes]
rs17075587	1.00[AMR][1000 genomes]
rs17075614	1.00[AMR][1000 genomes]
rs17075617	1.00[AMR][1000 genomes]
rs17075623	1.00[AMR][1000 genomes]
rs17075624	1.00[AMR][1000 genomes]
rs17254716	1.00[AMR][1000 genomes]
rs17320381	1.00[AMR][1000 genomes]
rs17405728	1.00[AMR][1000 genomes]
rs17406148	1.00[AMR][1000 genomes]
rs17472888	1.00[AMR][1000 genomes]
rs34343482	1.00[AMR][1000 genomes]
rs34730190	1.00[AMR][1000 genomes]
rs41321344	1.00[AMR][1000 genomes]
rs55694436	1.00[AMR][1000 genomes]
rs55730605	1.00[AMR][1000 genomes]
rs55760455	1.00[AMR][1000 genomes]
rs55765643	1.00[AMR][1000 genomes]
rs55804512	1.00[AMR][1000 genomes]
rs55837468	1.00[AMR][1000 genomes]
rs55864645	1.00[AMR][1000 genomes]
rs55887904	1.00[AMR][1000 genomes]
rs55908419	1.00[AMR][1000 genomes]
rs55915337	1.00[AMR][1000 genomes]
rs55951861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55957435	1.00[AMR][1000 genomes]
rs56100043	1.00[AMR][1000 genomes]
rs56225070	1.00[AMR][1000 genomes]
rs56282728	1.00[AMR][1000 genomes]
rs56285372	1.00[AMR][1000 genomes]
rs56286131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56388016	1.00[AMR][1000 genomes]
rs56395291	1.00[AMR][1000 genomes]
rs56659864	1.00[AMR][1000 genomes]
rs56741341	1.00[AMR][1000 genomes]
rs57019763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57020473	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57376786	1.00[AMR][1000 genomes]
rs58158782	1.00[AMR][1000 genomes]
rs58209397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58216554	1.00[AMR][1000 genomes]
rs58508138	1.00[AMR][1000 genomes]
rs58636339	1.00[AMR][1000 genomes]
rs58866653	1.00[AMR][1000 genomes]
rs59113361	1.00[AMR][1000 genomes]
rs59121457	1.00[AMR][1000 genomes]
rs59276993	1.00[AMR][1000 genomes]
rs59495244	1.00[AMR][1000 genomes]
rs59545985	1.00[AMR][1000 genomes]
rs59706458	1.00[AMR][1000 genomes]
rs59872395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59930267	1.00[AMR][1000 genomes]
rs60689590	1.00[AMR][1000 genomes]
rs61270592	1.00[AMR][1000 genomes]
rs61375879	1.00[AMR][1000 genomes]
rs61644103	1.00[AMR][1000 genomes]
rs73829182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829189	1.00[AMR][1000 genomes]
rs73829191	1.00[AMR][1000 genomes]
rs73831214	1.00[AMR][1000 genomes]
rs73831218	1.00[AMR][1000 genomes]
rs73831224	1.00[AMR][1000 genomes]
rs73831226	1.00[AMR][1000 genomes]
rs73831227	1.00[AMR][1000 genomes]
rs73831232	1.00[AMR][1000 genomes]
rs73831233	1.00[AMR][1000 genomes]
rs73831234	1.00[AMR][1000 genomes]
rs73831236	1.00[AMR][1000 genomes]
rs73831237	1.00[AMR][1000 genomes]
rs73831238	1.00[AMR][1000 genomes]
rs73831239	1.00[AMR][1000 genomes]
rs73831240	1.00[AMR][1000 genomes]
rs73831241	1.00[AMR][1000 genomes]
rs73831242	1.00[AMR][1000 genomes]
rs73831243	1.00[AMR][1000 genomes]
rs73831244	1.00[AMR][1000 genomes]
rs73831245	1.00[AMR][1000 genomes]
rs73831247	1.00[AMR][1000 genomes]
rs73831248	1.00[AMR][1000 genomes]
rs73831249	1.00[AMR][1000 genomes]
rs73831250	1.00[AMR][1000 genomes]
rs73831251	1.00[AMR][1000 genomes]
rs73831252	1.00[AMR][1000 genomes]
rs73831253	1.00[AMR][1000 genomes]
rs73831256	1.00[AMR][1000 genomes]
rs73831261	1.00[AMR][1000 genomes]
rs73831271	1.00[AMR][1000 genomes]
rs73831273	1.00[AMR][1000 genomes]
rs73831274	1.00[AMR][1000 genomes]
rs73831275	1.00[AMR][1000 genomes]
rs73831277	1.00[AMR][1000 genomes]
rs73831279	1.00[AMR][1000 genomes]
rs73831280	1.00[AMR][1000 genomes]
rs73831281	1.00[AMR][1000 genomes]
rs73831283	1.00[AMR][1000 genomes]
rs73831285	1.00[AMR][1000 genomes]
rs984347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43269600-43272600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:43271800-43272200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:43271800-43272200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:43271800-43273600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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