Variant report

Variant	rs17075422
Chromosome Location	chr3:43308315-43308316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43306571..43309448-chr3:43310200..43312609,2	K562	blood:

Extended variants
information (count: 114 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs17075424	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075519	1.00[AMR][1000 genomes]
rs17075525	1.00[AMR][1000 genomes]
rs17075540	1.00[AMR][1000 genomes]
rs17075545	1.00[AMR][1000 genomes]
rs17075555	1.00[AMR][1000 genomes]
rs17075561	1.00[AMR][1000 genomes]
rs17075563	1.00[AMR][1000 genomes]
rs17075568	1.00[AMR][1000 genomes]
rs17075570	1.00[AMR][1000 genomes]
rs17075574	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs17075581	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075587	1.00[AMR][1000 genomes]
rs17075614	1.00[AMR][1000 genomes]
rs17075617	1.00[AMR][1000 genomes]
rs17075623	1.00[AMR][1000 genomes]
rs17075624	1.00[AMR][1000 genomes]
rs17254716	1.00[AMR][1000 genomes]
rs17320381	1.00[AMR][1000 genomes]
rs17405728	1.00[AMR][1000 genomes]
rs17406148	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17406718	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs17472888	1.00[AMR][1000 genomes]
rs34343482	1.00[AMR][1000 genomes]
rs34730190	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41321344	1.00[AMR][1000 genomes]
rs55694436	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727302	1.00[AMR][1000 genomes]
rs55730605	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55760455	1.00[AMR][1000 genomes]
rs55765643	1.00[AMR][1000 genomes]
rs55804512	1.00[AMR][1000 genomes]
rs55837468	1.00[AMR][1000 genomes]
rs55864645	1.00[AMR][1000 genomes]
rs55887904	1.00[AMR][1000 genomes]
rs55908419	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55915337	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55951861	1.00[AMR][1000 genomes]
rs55957435	1.00[AMR][1000 genomes]
rs56100043	1.00[AMR][1000 genomes]
rs56225070	1.00[AMR][1000 genomes]
rs56282728	1.00[AMR][1000 genomes]
rs56285372	1.00[AMR][1000 genomes]
rs56286131	1.00[AMR][1000 genomes]
rs56388016	1.00[AMR][1000 genomes]
rs56395291	1.00[AMR][1000 genomes]
rs56659864	1.00[AMR][1000 genomes]
rs56741341	1.00[AMR][1000 genomes]
rs57019763	1.00[AMR][1000 genomes]
rs57020473	1.00[AMR][1000 genomes]
rs57376786	1.00[AMR][1000 genomes]
rs58158782	1.00[AMR][1000 genomes]
rs58209397	1.00[AMR][1000 genomes]
rs58216554	1.00[AMR][1000 genomes]
rs58508138	1.00[AMR][1000 genomes]
rs58636339	1.00[AMR][1000 genomes]
rs58866653	1.00[AMR][1000 genomes]
rs59113361	1.00[AMR][1000 genomes]
rs59121457	1.00[AMR][1000 genomes]
rs59276993	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59495244	1.00[AMR][1000 genomes]
rs59545985	1.00[AMR][1000 genomes]
rs59706458	1.00[AMR][1000 genomes]
rs59872395	1.00[AMR][1000 genomes]
rs59930267	1.00[AMR][1000 genomes]
rs60689590	1.00[AMR][1000 genomes]
rs61270592	1.00[AMR][1000 genomes]
rs61375879	1.00[AMR][1000 genomes]
rs61644103	1.00[AMR][1000 genomes]
rs73829182	1.00[AMR][1000 genomes]
rs73829183	1.00[AMR][1000 genomes]
rs73829189	1.00[AMR][1000 genomes]
rs73829191	1.00[AMR][1000 genomes]
rs73831214	1.00[AMR][1000 genomes]
rs73831218	1.00[AMR][1000 genomes]
rs73831224	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831226	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831227	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831230	0.81[AFR][1000 genomes]
rs73831232	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831233	1.00[AMR][1000 genomes]
rs73831234	1.00[AMR][1000 genomes]
rs73831236	1.00[AMR][1000 genomes]
rs73831237	1.00[AMR][1000 genomes]
rs73831238	1.00[AMR][1000 genomes]
rs73831239	1.00[AMR][1000 genomes]
rs73831240	1.00[AMR][1000 genomes]
rs73831241	1.00[AMR][1000 genomes]
rs73831242	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831243	1.00[AMR][1000 genomes]
rs73831244	1.00[AMR][1000 genomes]
rs73831245	1.00[AMR][1000 genomes]
rs73831247	1.00[AMR][1000 genomes]
rs73831248	1.00[AMR][1000 genomes]
rs73831249	1.00[AMR][1000 genomes]
rs73831250	1.00[AMR][1000 genomes]
rs73831251	1.00[AMR][1000 genomes]
rs73831252	1.00[AMR][1000 genomes]
rs73831253	1.00[AMR][1000 genomes]
rs73831256	1.00[AMR][1000 genomes]
rs73831261	1.00[AMR][1000 genomes]
rs73831271	1.00[AMR][1000 genomes]
rs73831273	1.00[AMR][1000 genomes]
rs73831274	1.00[AMR][1000 genomes]
rs73831275	1.00[AMR][1000 genomes]
rs73831277	1.00[AMR][1000 genomes]
rs73831279	1.00[AMR][1000 genomes]
rs73831280	1.00[AMR][1000 genomes]
rs73831281	1.00[AMR][1000 genomes]
rs73831283	1.00[AMR][1000 genomes]
rs73831285	1.00[AMR][1000 genomes]
rs984347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17075422	FLJ10375	cis	multi-tissue	Pritchard
rs17075422	ANO10	cis	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43302000-43314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:43302400-43310000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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