Variant report

Variant	rs17405728
Chromosome Location	chr3:43304701-43304702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs17075422	1.00[AMR][1000 genomes]
rs17075424	1.00[AMR][1000 genomes]
rs17075519	1.00[AMR][1000 genomes]
rs17075525	1.00[AMR][1000 genomes]
rs17075540	1.00[AMR][1000 genomes]
rs17075545	1.00[AMR][1000 genomes]
rs17075555	1.00[AMR][1000 genomes]
rs17075561	1.00[AMR][1000 genomes]
rs17075563	1.00[AMR][1000 genomes]
rs17075568	1.00[AMR][1000 genomes]
rs17075570	1.00[AMR][1000 genomes]
rs17075574	1.00[AMR][1000 genomes]
rs17075581	1.00[AMR][1000 genomes]
rs17075587	1.00[AMR][1000 genomes]
rs17075614	1.00[AMR][1000 genomes]
rs17075617	1.00[AMR][1000 genomes]
rs17075623	1.00[AMR][1000 genomes]
rs17075624	1.00[AMR][1000 genomes]
rs17254716	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17320381	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17406148	1.00[AMR][1000 genomes]
rs17472888	1.00[AMR][1000 genomes]
rs34343482	1.00[AMR][1000 genomes]
rs34730190	1.00[AMR][1000 genomes]
rs41321344	1.00[AMR][1000 genomes]
rs55694436	1.00[AMR][1000 genomes]
rs55727302	1.00[AMR][1000 genomes]
rs55730605	1.00[AMR][1000 genomes]
rs55760455	1.00[AMR][1000 genomes]
rs55765643	1.00[AMR][1000 genomes]
rs55804512	1.00[AMR][1000 genomes]
rs55837468	1.00[AMR][1000 genomes]
rs55864645	1.00[AMR][1000 genomes]
rs55887904	1.00[AMR][1000 genomes]
rs55908419	1.00[AMR][1000 genomes]
rs55915337	1.00[AMR][1000 genomes]
rs55951861	1.00[AMR][1000 genomes]
rs55957435	1.00[AMR][1000 genomes]
rs56100043	1.00[AMR][1000 genomes]
rs56225070	1.00[AMR][1000 genomes]
rs56282728	1.00[AMR][1000 genomes]
rs56285372	1.00[AMR][1000 genomes]
rs56286131	1.00[AMR][1000 genomes]
rs56388016	1.00[AMR][1000 genomes]
rs56395291	1.00[AMR][1000 genomes]
rs56659864	1.00[AMR][1000 genomes]
rs56741341	1.00[AMR][1000 genomes]
rs57019763	1.00[AMR][1000 genomes]
rs57020473	1.00[AMR][1000 genomes]
rs57376786	1.00[AMR][1000 genomes]
rs58158782	1.00[AMR][1000 genomes]
rs58209397	1.00[AMR][1000 genomes]
rs58216554	1.00[AMR][1000 genomes]
rs58508138	1.00[AMR][1000 genomes]
rs58636339	1.00[AMR][1000 genomes]
rs58866653	1.00[AMR][1000 genomes]
rs59113361	1.00[AMR][1000 genomes]
rs59121457	1.00[AMR][1000 genomes]
rs59276993	1.00[AMR][1000 genomes]
rs59495244	1.00[AMR][1000 genomes]
rs59545985	1.00[AMR][1000 genomes]
rs59706458	1.00[AMR][1000 genomes]
rs59872395	1.00[AMR][1000 genomes]
rs59930267	1.00[AMR][1000 genomes]
rs60689590	1.00[AMR][1000 genomes]
rs61270592	1.00[AMR][1000 genomes]
rs61375879	1.00[AMR][1000 genomes]
rs61644103	1.00[AMR][1000 genomes]
rs73829182	1.00[AMR][1000 genomes]
rs73829183	1.00[AMR][1000 genomes]
rs73829189	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829191	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831214	1.00[AMR][1000 genomes]
rs73831218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831224	1.00[AMR][1000 genomes]
rs73831226	1.00[AMR][1000 genomes]
rs73831227	1.00[AMR][1000 genomes]
rs73831232	1.00[AMR][1000 genomes]
rs73831233	1.00[AMR][1000 genomes]
rs73831234	1.00[AMR][1000 genomes]
rs73831236	1.00[AMR][1000 genomes]
rs73831237	1.00[AMR][1000 genomes]
rs73831238	1.00[AMR][1000 genomes]
rs73831239	1.00[AMR][1000 genomes]
rs73831240	1.00[AMR][1000 genomes]
rs73831241	1.00[AMR][1000 genomes]
rs73831242	1.00[AMR][1000 genomes]
rs73831243	1.00[AMR][1000 genomes]
rs73831244	1.00[AMR][1000 genomes]
rs73831245	1.00[AMR][1000 genomes]
rs73831247	1.00[AMR][1000 genomes]
rs73831248	1.00[AMR][1000 genomes]
rs73831249	1.00[AMR][1000 genomes]
rs73831250	1.00[AMR][1000 genomes]
rs73831251	1.00[AMR][1000 genomes]
rs73831252	1.00[AMR][1000 genomes]
rs73831253	1.00[AMR][1000 genomes]
rs73831256	1.00[AMR][1000 genomes]
rs73831261	1.00[AMR][1000 genomes]
rs73831271	1.00[AMR][1000 genomes]
rs73831273	1.00[AMR][1000 genomes]
rs73831274	1.00[AMR][1000 genomes]
rs73831275	1.00[AMR][1000 genomes]
rs73831277	1.00[AMR][1000 genomes]
rs73831279	1.00[AMR][1000 genomes]
rs73831280	1.00[AMR][1000 genomes]
rs73831281	1.00[AMR][1000 genomes]
rs73831283	1.00[AMR][1000 genomes]
rs73831285	1.00[AMR][1000 genomes]
rs984347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43296800-43305800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:43299800-43306400	Weak transcription	Spleen	Spleen
3	chr3:43299800-43308200	Weak transcription	Right Atrium	heart
4	chr3:43300400-43305800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:43300400-43305800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:43300600-43305800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:43300600-43306000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:43302000-43314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:43302400-43310000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:43304200-43305000	Enhancers	Primary neutrophils fromperipheralblood	blood

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