Variant report

Variant	rs17075424
Chromosome Location	chr3:43308754-43308755
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43306571..43309448-chr3:43310200..43312609,2	K562	blood:

Extended variants
information (count: 120 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs17075422	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075519	1.00[AMR][1000 genomes]
rs17075525	1.00[AMR][1000 genomes]
rs17075540	1.00[AMR][1000 genomes]
rs17075545	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075555	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075561	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075563	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075564	0.80[AFR][1000 genomes]
rs17075568	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075570	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075574	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075581	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075587	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075614	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075617	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075623	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075624	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17254716	1.00[AMR][1000 genomes]
rs17320381	1.00[AMR][1000 genomes]
rs17405728	1.00[AMR][1000 genomes]
rs17406148	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17406718	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs17472888	1.00[AMR][1000 genomes]
rs2036617	0.83[AFR][1000 genomes]
rs34343482	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34730190	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41321344	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55694436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727302	1.00[AMR][1000 genomes]
rs55730605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55760455	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55765643	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55786717	0.91[AFR][1000 genomes]
rs55804512	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55837468	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55864645	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55887904	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55908419	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55915337	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55951861	1.00[AMR][1000 genomes]
rs55957435	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56225070	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56282728	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56285372	1.00[AMR][1000 genomes]
rs56286131	1.00[AMR][1000 genomes]
rs56388016	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56395291	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56659864	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56741341	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57019763	1.00[AMR][1000 genomes]
rs57020473	1.00[AMR][1000 genomes]
rs57147822	0.80[AFR][1000 genomes]
rs57376786	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58158782	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58209397	1.00[AMR][1000 genomes]
rs58216554	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58508138	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58636339	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58866653	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59113361	1.00[AMR][1000 genomes]
rs59121457	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59276993	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59495244	1.00[AMR][1000 genomes]
rs59545985	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59706458	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59872395	1.00[AMR][1000 genomes]
rs59930267	1.00[AMR][1000 genomes]
rs60689590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61270592	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61375879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61644103	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6799735	1.00[YRI][hapmap]
rs73829182	1.00[AMR][1000 genomes]
rs73829183	1.00[AMR][1000 genomes]
rs73829189	1.00[AMR][1000 genomes]
rs73829191	1.00[AMR][1000 genomes]
rs73831214	1.00[AMR][1000 genomes]
rs73831218	1.00[AMR][1000 genomes]
rs73831224	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831227	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831230	0.88[AFR][1000 genomes]
rs73831232	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831233	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831234	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831236	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831237	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831238	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831239	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831240	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831241	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831242	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831243	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831244	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831245	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831247	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831248	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831249	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831250	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831251	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831252	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831253	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831256	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831261	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831267	0.83[AFR][1000 genomes]
rs73831271	1.00[AMR][1000 genomes]
rs73831273	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831274	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831275	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831277	1.00[AMR][1000 genomes]
rs73831279	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831280	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831281	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831283	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831285	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs984347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17075424	TMEM16K	cis	multi-tissue	Pritchard
rs17075424	FLJ10375	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43302000-43314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:43302400-43310000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links