The 2.0 version of rSNPBase

Variant report

Variant rs17075617
Chromosome Location chr3:43409895-43409896
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:43391600-43436000 Weak transcription Colonic Mucosa Colon
2 chr3:43392200-43419600 Weak transcription Rectal Smooth Muscle rectum
3 chr3:43400000-43419400 Weak transcription Primary T cells from cord blood blood
4 chr3:43401400-43414600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr3:43402400-43413400 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr3:43402600-43413600 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr3:43403000-43412800 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr3:43403000-43419400 Weak transcription Colon Smooth Muscle Colon
9 chr3:43403800-43414600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr3:43404200-43411600 Weak transcription Brain Substantia Nigra brain
11 chr3:43404200-43413400 Weak transcription H1 Cell Line embryonic stem cell
12 chr3:43404600-43414600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr3:43404800-43412000 Weak transcription Brain Inferior Temporal Lobe brain
14 chr3:43405000-43414000 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr3:43405000-43419400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr3:43405400-43411000 Weak transcription Pancreas Pancrea
17 chr3:43405400-43414800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr3:43405600-43414800 Weak transcription Osteobl bone
19 chr3:43405800-43415000 Weak transcription HSMM muscle
20 chr3:43406800-43414000 Weak transcription H9 Cell Line embryonic stem cell
21 chr3:43406800-43414600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr3:43407200-43413000 Weak transcription Thymus Thymus
23 chr3:43407600-43410200 Weak transcription Aorta Aorta
24 chr3:43407600-43410600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr3:43407800-43410800 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr3:43407800-43411600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr3:43408000-43410200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr3:43408000-43412400 Weak transcription Placenta Amnion Placenta Amnion
29 chr3:43408000-43413600 Weak transcription Brain Germinal Matrix brain
30 chr3:43408000-43413800 Weak transcription HUES48 Cell Line embryonic stem cell
31 chr3:43408000-43414600 Weak transcription Brain Anterior Caudate brain
32 chr3:43408000-43415000 Weak transcription Fetal Brain Female brain
33 chr3:43408200-43410000 Enhancers Fetal Muscle Trunk muscle
34 chr3:43408200-43410800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr3:43408200-43411000 Weak transcription Monocytes-CD14+_RO01746 blood
36 chr3:43408200-43413800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr3:43408200-43414200 Weak transcription iPS-18 Cell Line embryonic stem cell
38 chr3:43408200-43414400 Weak transcription Muscle Satellite Cultured Cells --
39 chr3:43408200-43419200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr3:43408200-43419800 Weak transcription NHLF lung
41 chr3:43408400-43410600 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr3:43408400-43411000 Weak transcription Primary monocytes fromperipheralblood blood
43 chr3:43408400-43412400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr3:43408400-43414600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr3:43408400-43414800 Weak transcription Right Atrium heart
46 chr3:43408400-43415200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr3:43408400-43418200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr3:43408400-43419600 Weak transcription Fetal Intestine Small intestine
49 chr3:43408600-43410800 Weak transcription Esophagus oesophagus
50 chr3:43408600-43411000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015