The 2.0 version of rSNPBase

Variant report

Variant rs17406718
Chromosome Location chr3:43368673-43368674
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:43332800-43377000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr3:43346000-43377000 Weak transcription K562 blood
3 chr3:43348400-43378800 Weak transcription Hela-S3 cervix
4 chr3:43351000-43375600 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr3:43353000-43374000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr3:43353400-43375200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr3:43354400-43369600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr3:43359400-43374000 Weak transcription Placenta Placenta
9 chr3:43359400-43376600 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr3:43359600-43371800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr3:43359600-43372000 Weak transcription NHLF lung
12 chr3:43359600-43372200 Weak transcription HSMM muscle
13 chr3:43359600-43375400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr3:43359600-43376200 Weak transcription H1 Cell Line embryonic stem cell
15 chr3:43359800-43369800 Weak transcription NHEK skin
16 chr3:43360400-43375600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr3:43360400-43376200 Weak transcription Brain Germinal Matrix brain
18 chr3:43361200-43374600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr3:43361200-43377800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr3:43363600-43374000 Weak transcription Fetal Muscle Trunk muscle
21 chr3:43364200-43371600 Enhancers Primary T helper cells PMA-I stimulated --
22 chr3:43364800-43370600 Enhancers Primary T helper naive cells fromperipheralblood blood
23 chr3:43365000-43370400 Enhancers Primary T killer memory cells from peripheral blood blood
24 chr3:43365200-43370400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
25 chr3:43365200-43371200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
26 chr3:43365200-43371200 Enhancers Primary T killer naive cells fromperipheralblood blood
27 chr3:43365400-43369600 Enhancers Primary B cells from peripheral blood blood
28 chr3:43365400-43370200 Enhancers Primary T helper cells fromperipheralblood blood
29 chr3:43365400-43370400 Enhancers Primary hematopoietic stem cells short term culture blood
30 chr3:43365400-43370400 Enhancers Primary T helper naive cells from peripheral blood blood
31 chr3:43365400-43373600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr3:43365600-43369800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr3:43365600-43370200 Enhancers Primary monocytes fromperipheralblood blood
34 chr3:43365600-43370200 Enhancers Primary hematopoietic stem cells blood
35 chr3:43365600-43370600 Enhancers Primary T helper 17 cells PMA-I stimulated --
36 chr3:43365800-43370400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr3:43366000-43369800 Enhancers Monocytes-CD14+_RO01746 blood
38 chr3:43366200-43370400 Enhancers Primary neutrophils fromperipheralblood blood
39 chr3:43366200-43370600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
40 chr3:43366400-43370200 Enhancers Skeletal Muscle Male skeletal muscle
41 chr3:43366400-43370400 Enhancers Duodenum Smooth Muscle Duodenum
42 chr3:43366600-43370400 Enhancers Fetal Thymus thymus
43 chr3:43366600-43370600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
44 chr3:43366800-43369400 Enhancers Small Intestine intestine
45 chr3:43367000-43368800 Enhancers Fetal Intestine Small intestine
46 chr3:43367000-43368800 Genic enhancers HUVEC blood vessel
47 chr3:43367000-43369400 Enhancers Fetal Intestine Large intestine
48 chr3:43367000-43369600 Enhancers Colon Smooth Muscle Colon
49 chr3:43367200-43369000 Enhancers Fetal Adrenal Gland Adrenal Gland
50 chr3:43367200-43369200 Enhancers Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015