Variant report

Variant	rs56395291
Chromosome Location	chr3:43411347-43411348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:43411286-43411926	HL-60	blood:	n/a	chr3:43411640-43411653 chr3:43411658-43411671 chr3:43411660-43411669

Variant related genes	Relation type
ANO10	TF binding region

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs17075422	1.00[AMR][1000 genomes]
rs17075424	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075519	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075525	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075540	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075545	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075563	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075564	0.88[AFR][1000 genomes]
rs17075568	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075574	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075581	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075617	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075623	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075709	0.82[AFR][1000 genomes]
rs17254716	1.00[AMR][1000 genomes]
rs17320381	1.00[AMR][1000 genomes]
rs17405728	1.00[AMR][1000 genomes]
rs17406148	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17406718	0.88[AFR][1000 genomes]
rs17472888	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036617	0.91[AFR][1000 genomes]
rs2086652	0.82[AFR][1000 genomes]
rs34343482	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34730190	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41321344	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4368477	0.82[AFR][1000 genomes]
rs55694436	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55727302	1.00[AMR][1000 genomes]
rs55730605	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55760455	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55765643	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55786717	0.88[AFR][1000 genomes]
rs55804512	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55837468	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55864645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55887904	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55908419	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55915337	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55951861	1.00[AMR][1000 genomes]
rs55957435	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100043	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56209592	0.82[AFR][1000 genomes]
rs56225070	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56282728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56285372	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56286131	1.00[AMR][1000 genomes]
rs56388016	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56659864	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56741341	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56849726	0.82[AFR][1000 genomes]
rs57019763	1.00[AMR][1000 genomes]
rs57020473	1.00[AMR][1000 genomes]
rs57376786	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58066802	0.82[AFR][1000 genomes]
rs58158782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58209397	1.00[AMR][1000 genomes]
rs58216554	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58508138	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58636339	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58866653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59113361	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59121457	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59276993	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59433561	0.82[AFR][1000 genomes]
rs59495244	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59545985	1.00[AMR][1000 genomes]
rs59706458	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59872395	1.00[AMR][1000 genomes]
rs59930267	1.00[AMR][1000 genomes]
rs60689590	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61270592	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61375879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61644103	1.00[AMR][1000 genomes]
rs73829182	1.00[AMR][1000 genomes]
rs73829183	1.00[AMR][1000 genomes]
rs73829189	1.00[AMR][1000 genomes]
rs73829191	1.00[AMR][1000 genomes]
rs73831214	1.00[AMR][1000 genomes]
rs73831218	1.00[AMR][1000 genomes]
rs73831224	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831226	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831227	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831230	0.85[AFR][1000 genomes]
rs73831232	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831233	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831234	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831236	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831237	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831238	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831239	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831241	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831242	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831243	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831245	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831247	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831248	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831249	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831250	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831251	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831252	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831253	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831256	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831261	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831267	0.91[AFR][1000 genomes]
rs73831271	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831273	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831275	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831277	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831280	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831283	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831285	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831287	0.85[AFR][1000 genomes]
rs73831288	0.82[AFR][1000 genomes]
rs73831291	0.82[AFR][1000 genomes]
rs73831292	0.82[AFR][1000 genomes]
rs73831294	0.82[AFR][1000 genomes]
rs73831295	0.82[AFR][1000 genomes]
rs73831296	0.82[AFR][1000 genomes]
rs73831297	0.82[AFR][1000 genomes]
rs73831301	0.82[AFR][1000 genomes]
rs73832606	0.82[AFR][1000 genomes]
rs984347	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:43400000-43419400	Weak transcription	Primary T cells from cord blood	blood
4	chr3:43401400-43414600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:43402400-43413400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:43402600-43413600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:43403000-43412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:43403000-43419400	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:43403800-43414600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:43404200-43411600	Weak transcription	Brain Substantia Nigra	brain
11	chr3:43404200-43413400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:43404600-43414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:43404800-43412000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:43405000-43414000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:43405000-43419400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:43405400-43414800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:43405600-43414800	Weak transcription	Osteobl	bone
18	chr3:43405800-43415000	Weak transcription	HSMM	muscle
19	chr3:43406800-43414000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:43406800-43414600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:43407200-43413000	Weak transcription	Thymus	Thymus
22	chr3:43407800-43411600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:43408000-43412400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:43408000-43413600	Weak transcription	Brain Germinal Matrix	brain
25	chr3:43408000-43413800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:43408000-43414600	Weak transcription	Brain Anterior Caudate	brain
27	chr3:43408000-43415000	Weak transcription	Fetal Brain Female	brain
28	chr3:43408200-43413800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:43408200-43414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:43408200-43414400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr3:43408200-43419200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:43408200-43419800	Weak transcription	NHLF	lung
33	chr3:43408400-43412400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:43408400-43414600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:43408400-43414800	Weak transcription	Right Atrium	heart
36	chr3:43408400-43415200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:43408400-43418200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:43408400-43419600	Weak transcription	Fetal Intestine Small	intestine
39	chr3:43408600-43412400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:43408600-43412400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:43408600-43412800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:43408600-43431200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr3:43408800-43414200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr3:43408800-43429800	Weak transcription	Right Ventricle	heart
45	chr3:43408800-43431000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:43409000-43411400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr3:43409000-43412600	Weak transcription	Placenta	Placenta
48	chr3:43409200-43413200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr3:43409200-43414400	Weak transcription	Fetal Stomach	stomach
50	chr3:43409200-43420400	Weak transcription	HSMMtube	muscle

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