Variant report

Variant	rs55969335
Chromosome Location	chr3:43635126-43635127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs17075614	0.82[AFR][1000 genomes]
rs17075623	0.82[AFR][1000 genomes]
rs17075624	0.82[AFR][1000 genomes]
rs17075696	0.88[AFR][1000 genomes]
rs17075709	0.94[AFR][1000 genomes]
rs17075750	1.00[AFR][1000 genomes]
rs17075759	1.00[AFR][1000 genomes]
rs17075762	1.00[AFR][1000 genomes]
rs17075773	1.00[AFR][1000 genomes]
rs17075776	1.00[AFR][1000 genomes]
rs17075780	1.00[AFR][1000 genomes]
rs17075784	1.00[AFR][1000 genomes]
rs2086652	0.94[AFR][1000 genomes]
rs34343482	0.82[AFR][1000 genomes]
rs4368477	0.94[AFR][1000 genomes]
rs55692701	0.94[AFR][1000 genomes]
rs55760455	0.82[AFR][1000 genomes]
rs55823043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55919732	1.00[AFR][1000 genomes]
rs56209592	0.94[AFR][1000 genomes]
rs56282728	0.82[AFR][1000 genomes]
rs56849726	0.94[AFR][1000 genomes]
rs57147822	0.88[AFR][1000 genomes]
rs58066802	0.94[AFR][1000 genomes]
rs58158782	0.82[AFR][1000 genomes]
rs58216554	0.82[AFR][1000 genomes]
rs58310281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58694029	1.00[AFR][1000 genomes]
rs59113361	0.91[AFR][1000 genomes]
rs59121457	0.82[AFR][1000 genomes]
rs59423218	1.00[AFR][1000 genomes]
rs59433561	0.94[AFR][1000 genomes]
rs59495244	0.91[AFR][1000 genomes]
rs60754038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829503	0.91[AFR][1000 genomes]
rs73831273	0.82[AFR][1000 genomes]
rs73831274	0.82[AFR][1000 genomes]
rs73831275	0.82[AFR][1000 genomes]
rs73831280	0.82[AFR][1000 genomes]
rs73831281	0.82[AFR][1000 genomes]
rs73831283	0.82[AFR][1000 genomes]
rs73831285	0.82[AFR][1000 genomes]
rs73831287	0.91[AFR][1000 genomes]
rs73831288	0.94[AFR][1000 genomes]
rs73831291	0.94[AFR][1000 genomes]
rs73831292	0.94[AFR][1000 genomes]
rs73831294	0.94[AFR][1000 genomes]
rs73831295	0.94[AFR][1000 genomes]
rs73831296	0.94[AFR][1000 genomes]
rs73831297	0.94[AFR][1000 genomes]
rs73831301	0.94[AFR][1000 genomes]
rs73832606	0.94[AFR][1000 genomes]
rs73832607	1.00[AFR][1000 genomes]
rs73832614	1.00[AFR][1000 genomes]
rs73832616	1.00[AFR][1000 genomes]
rs73832620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832625	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43574800-43662400	Weak transcription	Right Ventricle	heart
2	chr3:43580600-43647600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:43587000-43647200	Weak transcription	Fetal Kidney	kidney
4	chr3:43589000-43648400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:43590600-43636400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:43614600-43653800	Weak transcription	HepG2	liver
7	chr3:43618400-43639400	Weak transcription	Liver	Liver
8	chr3:43618600-43644000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:43618600-43649600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:43618600-43654400	Weak transcription	Colonic Mucosa	Colon
11	chr3:43618600-43662400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:43622200-43648400	Weak transcription	HMEC	breast
13	chr3:43623600-43644400	Weak transcription	NHEK	skin
14	chr3:43624000-43657600	Weak transcription	Psoas Muscle	Psoas
15	chr3:43625800-43639400	Weak transcription	NHDF-Ad	bronchial
16	chr3:43625800-43662600	Weak transcription	Primary T cells from cord blood	blood
17	chr3:43626000-43643200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:43626200-43652400	Weak transcription	Osteobl	bone
19	chr3:43626400-43640200	Weak transcription	A549	lung
20	chr3:43627400-43646200	Weak transcription	HUVEC	blood vessel
21	chr3:43629400-43639400	Weak transcription	K562	blood
22	chr3:43630200-43642200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:43631200-43646000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:43632600-43635200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr3:43632800-43639400	Weak transcription	HSMM	muscle
26	chr3:43633000-43635400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:43633000-43639400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:43633200-43636400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:43633200-43639400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:43633200-43639400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:43633200-43639400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:43633200-43645200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr3:43633200-43647600	Weak transcription	HSMMtube	muscle
34	chr3:43633200-43654800	Weak transcription	Small Intestine	intestine
35	chr3:43633200-43662400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr3:43633400-43639200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:43633400-43639400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr3:43633400-43639400	Weak transcription	Adipose Nuclei	Adipose
39	chr3:43633400-43639600	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr3:43633400-43645200	Weak transcription	Fetal Muscle Leg	muscle
41	chr3:43633400-43645800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr3:43633400-43646400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:43633400-43648800	Weak transcription	Placenta	Placenta
44	chr3:43633400-43653800	Weak transcription	Gastric	stomach
45	chr3:43633400-43657800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:43633400-43662000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:43633400-43662600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr3:43633400-43662600	Weak transcription	Pancreas	Pancrea
49	chr3:43633600-43639000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:43633600-43639200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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