Variant report

Variant	rs6859750
Chromosome Location	chr5:108041607-108041608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10036583	1.00[JPT][hapmap]
rs10037675	1.00[JPT][hapmap]
rs10039132	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10039951	1.00[JPT][hapmap]
rs10041657	1.00[JPT][hapmap]
rs10042152	1.00[JPT][hapmap]
rs10042569	1.00[JPT][hapmap]
rs10050547	1.00[JPT][hapmap]
rs10052208	1.00[JPT][hapmap]
rs10052531	1.00[JPT][hapmap]
rs10054086	1.00[JPT][hapmap]
rs10061811	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10064960	1.00[JPT][hapmap]
rs10065605	1.00[JPT][hapmap]
rs10065611	1.00[JPT][hapmap]
rs10066173	0.84[ASN][1000 genomes]
rs10070327	1.00[JPT][hapmap]
rs10077917	1.00[JPT][hapmap]
rs10214241	0.84[ASN][1000 genomes]
rs10223256	0.82[JPT][hapmap]
rs10477428	1.00[JPT][hapmap]
rs10477429	1.00[JPT][hapmap]
rs10477432	1.00[JPT][hapmap]
rs10477931	1.00[JPT][hapmap]
rs11741855	0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11748534	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12719099	1.00[JPT][hapmap]
rs13358881	1.00[JPT][hapmap]
rs13359423	1.00[JPT][hapmap]
rs13360253	1.00[JPT][hapmap]
rs1396444	1.00[JPT][hapmap]
rs1423456	0.87[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs1423459	1.00[JPT][hapmap]
rs17161463	0.80[ASN][1000 genomes]
rs17161466	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17161505	1.00[JPT][hapmap]
rs17161540	1.00[JPT][hapmap]
rs17163941	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2009646	1.00[JPT][hapmap]
rs2081128	1.00[JPT][hapmap]
rs2113001	1.00[JPT][hapmap]
rs2229085	1.00[JPT][hapmap]
rs28376017	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2900037	1.00[JPT][hapmap]
rs35141056	1.00[JPT][hapmap]
rs3805600	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3805601	1.00[JPT][hapmap];0.85[MEX][hapmap];0.80[ASN][1000 genomes]
rs41508849	1.00[JPT][hapmap]
rs4358573	1.00[JPT][hapmap]
rs4361568	1.00[JPT][hapmap]
rs4479887	1.00[JPT][hapmap]
rs4560594	1.00[JPT][hapmap]
rs4560595	1.00[JPT][hapmap]
rs62361300	0.80[ASN][1000 genomes]
rs6594341	1.00[JPT][hapmap]
rs6859105	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869591	1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs6870408	0.84[ASN][1000 genomes]
rs6873130	1.00[JPT][hapmap]
rs6873917	1.00[JPT][hapmap]
rs6888173	1.00[JPT][hapmap]
rs7711892	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7715658	1.00[JPT][hapmap]
rs7728920	1.00[JPT][hapmap]
rs889269	1.00[JPT][hapmap]
rs9326750	1.00[JPT][hapmap]
rs9326752	1.00[JPT][hapmap]
rs9885265	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv980959	chr5:108023194-108043010	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108041400-108042800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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