Variant report

Variant	rs7079701
Chromosome Location	chr10:4736392-4736393
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3825706..3827439-chr10:4735235..4737929,2	MCF-7	breast:
2	chr10:4726532..4729778-chr10:4736353..4738324,3	MCF-7	breast:
3	chr10:4735130..4738619-chr10:4739106..4741935,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10795198	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904318	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904319	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904320	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904321	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904322	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904324	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10904325	0.87[ASN][1000 genomes]
rs10904326	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10904327	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10904329	0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap]
rs11252666	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252667	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252674	0.85[ASN][1000 genomes]
rs11252677	0.83[ASN][1000 genomes]
rs11252679	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1901635	0.85[ASN][1000 genomes]
rs2167695	0.85[ASN][1000 genomes]
rs36034519	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4372341	0.87[ASN][1000 genomes]
rs6601857	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6601858	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7090458	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7091473	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7895619	0.80[ASN][1000 genomes]
rs7905751	0.87[ASN][1000 genomes]
rs7923564	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4728200-4738000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:4734200-4745800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:4734400-4742800	Weak transcription	NHLF	lung
4	chr10:4734400-4743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:4734600-4742800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:4734800-4736400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:4734800-4740200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:4734800-4740200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:4734800-4745600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:4735000-4740200	Weak transcription	HMEC	breast
11	chr10:4735000-4746000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:4735600-4736400	Enhancers	Psoas Muscle	Psoas
13	chr10:4736000-4736800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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