Variant report

Variant	rs10904321
Chromosome Location	chr10:4746345-4746346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4719315..4721499-chr10:4746164..4748837,2	MCF-7	breast:
2	chr10:4745705..4748362-chr10:4752055..4753652,2	MCF-7	breast:
3	chr10:3826429..3828758-chr10:4745718..4747799,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231298	Chromatin interaction
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10795198	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904318	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904319	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904320	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904322	0.96[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904324	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10904325	0.95[ASN][1000 genomes]
rs10904326	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904327	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904329	0.89[CHD][hapmap];0.85[GIH][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs11252666	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11252667	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11252674	0.92[ASN][1000 genomes]
rs11252677	0.90[ASN][1000 genomes]
rs11252679	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1901635	0.92[ASN][1000 genomes]
rs2167695	0.92[ASN][1000 genomes]
rs36034519	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4372341	0.95[ASN][1000 genomes]
rs6601857	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6601858	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7079701	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7090458	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7091473	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7093111	0.86[ASN][1000 genomes]
rs7895619	0.87[ASN][1000 genomes]
rs7905751	0.95[ASN][1000 genomes]
rs7923564	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4736400-4746400	Weak transcription	Psoas Muscle	Psoas
2	chr10:4736400-4746400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:4738400-4755600	Weak transcription	Right Atrium	heart
4	chr10:4740600-4746400	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:4740600-4748200	Weak transcription	Left Ventricle	heart
6	chr10:4742600-4748400	Enhancers	HUVEC	blood vessel
7	chr10:4743400-4746400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:4743400-4758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:4745000-4748200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:4745600-4746600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:4745600-4747400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:4745800-4746400	Enhancers	Stomach Mucosa	stomach
13	chr10:4745800-4746600	Enhancers	Adipose Nuclei	Adipose
14	chr10:4745800-4746800	Enhancers	NHLF	lung
15	chr10:4745800-4747200	Enhancers	Hela-S3	cervix
16	chr10:4745800-4747400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:4745800-4747400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:4745800-4747400	Enhancers	HMEC	breast
19	chr10:4745800-4747400	Enhancers	NH-A	brain
20	chr10:4745800-4747400	Enhancers	NHDF-Ad	bronchial
21	chr10:4745800-4747400	Enhancers	Osteobl	bone
22	chr10:4745800-4747600	Enhancers	NHEK	skin
23	chr10:4746000-4746600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr10:4746000-4746800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:4746000-4746800	Enhancers	Rectal Smooth Muscle	rectum
26	chr10:4746000-4747000	Enhancers	Colon Smooth Muscle	Colon
27	chr10:4746000-4747200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:4746000-4747200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:4746000-4747400	Enhancers	HSMM	muscle
30	chr10:4746200-4746600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:4746200-4746600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:4746200-4746600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr10:4746200-4746800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:4746200-4746800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr10:4746200-4746800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:4746200-4746800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:4746200-4746800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:4746200-4746800	Enhancers	Fetal Heart	heart
39	chr10:4746200-4746800	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr10:4746200-4746800	Flanking Active TSS	A549	lung
41	chr10:4746200-4747000	Enhancers	Primary hematopoietic stem cells	blood
42	chr10:4746200-4747000	Enhancers	Monocytes-CD14+_RO01746	blood

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