Variant report

Variant	rs6601857
Chromosome Location	chr10:4755030-4755031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4733738..4735615-chr10:4753440..4756163,2	MCF-7	breast:
2	chr10:4752926..4755618-chr10:4756217..4757722,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10795198	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10904318	0.89[ASN][1000 genomes]
rs10904319	0.89[ASN][1000 genomes]
rs10904320	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10904321	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904322	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904324	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904325	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10904326	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904327	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904329	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11252666	0.83[ASN][1000 genomes]
rs11252667	0.83[ASN][1000 genomes]
rs11252674	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11252677	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252679	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1901635	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2167695	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36034519	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4372341	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6601858	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7079701	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7090458	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091473	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7093111	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7895619	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7905751	0.98[ASN][1000 genomes]
rs7923564	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4738400-4755600	Weak transcription	Right Atrium	heart
2	chr10:4743400-4758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:4746800-4762800	Weak transcription	NHLF	lung
4	chr10:4748400-4755400	Weak transcription	Left Ventricle	heart
5	chr10:4749200-4769400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:4754200-4757200	Weak transcription	Gastric	stomach
7	chr10:4754600-4755800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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