Variant report

Variant	rs7091473
Chromosome Location	chr10:4747974-4747975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4747123..4749970-chr10:4761005..4763536,2	MCF-7	breast:
2	chr10:4747185..4748870-chr10:4771156..4773442,2	K562	blood:
3	chr10:4719315..4721499-chr10:4746164..4748837,2	MCF-7	breast:
4	chr10:4745705..4748362-chr10:4752055..4753652,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231298	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10795198	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904318	0.96[ASN][1000 genomes]
rs10904319	0.96[ASN][1000 genomes]
rs10904320	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904321	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10904322	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10904324	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904325	0.96[ASN][1000 genomes]
rs10904326	0.93[ASN][1000 genomes]
rs10904327	0.93[ASN][1000 genomes]
rs10904329	0.87[ASN][1000 genomes]
rs11252666	0.89[ASN][1000 genomes]
rs11252667	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252674	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11252677	0.91[ASN][1000 genomes]
rs11252679	0.96[ASN][1000 genomes]
rs1901635	0.93[ASN][1000 genomes]
rs2167695	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs36034519	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372341	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6601857	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6601858	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7079701	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7090458	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7093111	0.87[ASN][1000 genomes]
rs7895619	0.88[ASN][1000 genomes]
rs7905751	0.96[ASN][1000 genomes]
rs7923564	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4738400-4755600	Weak transcription	Right Atrium	heart
2	chr10:4740600-4748200	Weak transcription	Left Ventricle	heart
3	chr10:4742600-4748400	Enhancers	HUVEC	blood vessel
4	chr10:4743400-4758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:4745000-4748200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:4746600-4748400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:4746600-4753400	Weak transcription	Gastric	stomach
8	chr10:4746600-4754200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:4746800-4762800	Weak transcription	NHLF	lung
10	chr10:4747200-4748000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:4747200-4748600	Weak transcription	A549	lung
12	chr10:4747200-4754000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:4747600-4748000	Weak transcription	Stomach Mucosa	stomach
14	chr10:4747600-4748200	Weak transcription	NHEK	skin

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