Variant report

Variant	rs11252679
Chromosome Location	chr10:4756587-4756588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4752926..4755618-chr10:4756217..4757722,2	MCF-7	breast:
2	chr10:4755976..4758860-chr10:4759457..4761434,2	K562	blood:
3	chr10:4755644..4758600-chr10:4771458..4775499,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10795198	0.91[ASN][1000 genomes]
rs10904318	0.91[ASN][1000 genomes]
rs10904319	0.91[ASN][1000 genomes]
rs10904320	0.91[ASN][1000 genomes]
rs10904321	0.81[CEU][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10904322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10904324	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904325	1.00[ASN][1000 genomes]
rs10904326	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904327	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904329	0.92[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.91[ASN][1000 genomes]
rs11252666	0.85[ASN][1000 genomes]
rs11252667	0.85[ASN][1000 genomes]
rs11252674	0.98[ASN][1000 genomes]
rs11252677	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1901635	0.98[ASN][1000 genomes]
rs2167695	0.98[ASN][1000 genomes]
rs36034519	0.96[ASN][1000 genomes]
rs4372341	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601857	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6601858	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7079701	0.85[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7090458	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7091473	0.96[ASN][1000 genomes]
rs7093111	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7895619	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7905751	1.00[ASN][1000 genomes]
rs7923564	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4743400-4758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:4746800-4762800	Weak transcription	NHLF	lung
3	chr10:4749200-4769400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4754200-4757200	Weak transcription	Gastric	stomach

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