Variant report

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:4761048..4762741-chr10:4773026..4775022,2	MCF-7	breast:
2	chr10:4774392..4777197-chr10:4807926..4810361,3	MCF-7	breast:
3	chr1:206808908..206811462-chr10:4772618..4775454,2	MCF-7	breast:
4	chr10:4702078..4707095-chr10:4773802..4779822,17	MCF-7	breast:
5	chr10:4702582..4706500-chr10:4772852..4778695,11	MCF-7	breast:
6	chr10:4761428..4765181-chr10:4774344..4777654,4	MCF-7	breast:
7	chr10:4755644..4758600-chr10:4771458..4775499,3	MCF-7	breast:
8	chr10:4769786..4771647-chr10:4773749..4776059,2	K562	blood:
9	chr10:3826914..3829739-chr10:4773573..4775632,4	MCF-7	breast:
10	chr10:4773770..4776982-chr10:4789881..4792527,4	MCF-7	breast:
11	chr10:4772925..4774982-chr10:4783375..4785130,2	MCF-7	breast:
12	chr10:4750679..4752473-chr10:4773758..4775302,2	MCF-7	breast:
13	chr10:4765059..4767680-chr10:4773650..4775608,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10795198	0.83[ASN][1000 genomes]
rs10904318	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10904319	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10904320	0.83[ASN][1000 genomes]
rs10904321	0.86[ASN][1000 genomes]
rs10904322	0.86[ASN][1000 genomes]
rs10904324	0.87[ASN][1000 genomes]
rs10904325	0.91[ASN][1000 genomes]
rs10904326	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10904327	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10904329	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252666	0.85[EUR][1000 genomes]
rs11252674	0.93[ASN][1000 genomes]
rs11252677	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11252679	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1901635	0.93[ASN][1000 genomes]
rs2167695	0.93[ASN][1000 genomes]
rs36034519	0.87[ASN][1000 genomes]
rs4372341	0.91[ASN][1000 genomes]
rs6601857	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6601858	0.94[ASN][1000 genomes]
rs7090458	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7091473	0.87[ASN][1000 genomes]
rs7895619	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7905751	0.91[ASN][1000 genomes]
rs7923564	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4768600-4775200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:4770400-4775200	Weak transcription	A549	lung
3	chr10:4771000-4775400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4774400-4775400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:4774800-4775800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:4774800-4776400	Enhancers	Placenta	Placenta
7	chr10:4774800-4776400	Enhancers	HMEC	breast

Quick Search: