Variant report

Variant	rs10904319
Chromosome Location	chr10:4741842-4741843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4735130..4738619-chr10:4739106..4741935,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10795198	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904318	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904320	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904321	0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904322	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904324	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904325	0.91[ASN][1000 genomes]
rs10904326	0.89[ASN][1000 genomes]
rs10904327	0.89[ASN][1000 genomes]
rs10904329	0.84[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11252666	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11252667	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11252674	0.89[ASN][1000 genomes]
rs11252677	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11252679	0.91[ASN][1000 genomes]
rs1901635	0.89[ASN][1000 genomes]
rs2167695	0.89[ASN][1000 genomes]
rs36034519	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4372341	0.91[ASN][1000 genomes]
rs6601857	0.89[ASN][1000 genomes]
rs6601858	0.88[ASN][1000 genomes]
rs7079701	0.91[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7090458	0.89[ASN][1000 genomes]
rs7091473	0.96[ASN][1000 genomes]
rs7093111	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7895619	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7905751	0.91[ASN][1000 genomes]
rs7923564	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4734200-4745800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:4734400-4742800	Weak transcription	NHLF	lung
3	chr10:4734400-4743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:4734600-4742800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:4734800-4745600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:4735000-4746000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4736400-4746400	Weak transcription	Psoas Muscle	Psoas
8	chr10:4736400-4746400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:4738400-4755600	Weak transcription	Right Atrium	heart
10	chr10:4740600-4742600	Weak transcription	HUVEC	blood vessel
11	chr10:4740600-4743200	Weak transcription	A549	lung
12	chr10:4740600-4745800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:4740600-4745800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:4740600-4745800	Weak transcription	Adipose Nuclei	Adipose
15	chr10:4740600-4745800	Weak transcription	NHEK	skin
16	chr10:4740600-4746000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:4740600-4746400	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:4740600-4748200	Weak transcription	Left Ventricle	heart
19	chr10:4740800-4742400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:4740800-4745800	Weak transcription	HMEC	breast
21	chr10:4741200-4742400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:4741200-4746000	Weak transcription	Rectal Smooth Muscle	rectum

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