Variant report

Variant	rs10904324
Chromosome Location	chr10:4750048-4750049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4748341..4750852-chr10:4751570..4754263,3	MCF-7	breast:
2	chr10:4748152..4751115-chr10:4763204..4765462,2	MCF-7	breast:
3	chr10:4748910..4750501-chr10:4752014..4754640,2	MCF-7	breast:
4	chr10:4728591..4731075-chr10:4749795..4752617,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10795198	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904318	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904319	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904320	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904321	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10904322	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10904325	0.96[ASN][1000 genomes]
rs10904326	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904327	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904329	0.87[ASN][1000 genomes]
rs11252666	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252667	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252674	0.93[ASN][1000 genomes]
rs11252677	0.91[ASN][1000 genomes]
rs11252679	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1901635	0.93[ASN][1000 genomes]
rs2167695	0.93[ASN][1000 genomes]
rs36034519	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372341	0.96[ASN][1000 genomes]
rs6601857	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6601858	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7079701	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7090458	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7091473	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093111	0.87[ASN][1000 genomes]
rs7895619	0.88[ASN][1000 genomes]
rs7905751	0.96[ASN][1000 genomes]
rs7923564	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4738400-4755600	Weak transcription	Right Atrium	heart
2	chr10:4743400-4758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:4746600-4753400	Weak transcription	Gastric	stomach
4	chr10:4746600-4754200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:4746800-4762800	Weak transcription	NHLF	lung
6	chr10:4747200-4754000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4748000-4750600	Enhancers	Stomach Mucosa	stomach
8	chr10:4748400-4750400	Weak transcription	HUVEC	blood vessel
9	chr10:4748400-4755400	Weak transcription	Left Ventricle	heart
10	chr10:4748600-4750400	Enhancers	A549	lung
11	chr10:4749200-4769400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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