Variant report

Variant	rs6601858
Chromosome Location	chr10:4760304-4760305
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4702583..4705681-chr10:4760032..4763003,3	MCF-7	breast:
2	chr10:4755976..4758860-chr10:4759457..4761434,2	K562	blood:
3	chr10:4704812..4707104-chr10:4757845..4760690,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10795198	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10904318	0.88[ASN][1000 genomes]
rs10904319	0.88[ASN][1000 genomes]
rs10904320	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10904321	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10904322	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10904324	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904325	0.97[ASN][1000 genomes]
rs10904326	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10904327	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10904329	0.94[ASN][1000 genomes]
rs11252666	0.82[ASN][1000 genomes]
rs11252667	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11252674	0.99[ASN][1000 genomes]
rs11252677	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11252679	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1901635	0.99[ASN][1000 genomes]
rs2167695	0.99[ASN][1000 genomes]
rs36034519	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4372341	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6601857	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7079701	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7090458	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7091473	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7093111	0.94[ASN][1000 genomes]
rs7895619	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7905751	0.97[ASN][1000 genomes]
rs7923564	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4746800-4762800	Weak transcription	NHLF	lung
2	chr10:4749200-4769400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:4759800-4760600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:4760000-4760400	Enhancers	Fetal Muscle Leg	muscle
5	chr10:4760000-4760400	Enhancers	Rectal Smooth Muscle	rectum
6	chr10:4760000-4762400	Enhancers	Fetal Heart	heart
7	chr10:4760200-4760600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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