Variant report

Variant	rs71482354
Chromosome Location	chr10:97150025-97150026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97149394..97150351-chr10:97360708..97361426,3	MCF-7	breast:
2	chr10:97143973..97145849-chr10:97148618..97150479,2	MCF-7	breast:
3	chr10:97149447..97150483-chr10:97360357..97361198,4	K562	blood:
4	chr10:97149803..97150837-chr10:97360594..97361494,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

rs_ID	r²[population]
rs11545359	0.82[AMR][1000 genomes]
rs12771392	0.87[AMR][1000 genomes]
rs12777787	0.87[AMR][1000 genomes]
rs34206975	0.87[AMR][1000 genomes]
rs34258576	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34363946	0.87[AMR][1000 genomes]
rs34600466	0.87[AMR][1000 genomes]
rs34969841	0.94[AMR][1000 genomes]
rs35045072	0.87[AMR][1000 genomes]
rs35265356	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35348091	0.82[AMR][1000 genomes]
rs35678254	0.87[AMR][1000 genomes]
rs35707641	0.82[AMR][1000 genomes]
rs35892931	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56363857	0.82[AMR][1000 genomes]
rs67008126	0.88[AMR][1000 genomes]
rs67201255	0.87[AMR][1000 genomes]
rs72822553	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:97140600-97158600	Weak transcription	HSMM	muscle
6	chr10:97140800-97152400	Weak transcription	Colonic Mucosa	Colon
7	chr10:97142200-97151800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:97142200-97152400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:97142400-97152400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:97143000-97151400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:97143600-97151000	Weak transcription	Fetal Lung	lung
13	chr10:97143600-97151400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:97144000-97151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:97144000-97152400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:97144000-97152400	Weak transcription	Psoas Muscle	Psoas
17	chr10:97144000-97155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:97144200-97151600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:97144400-97152400	Weak transcription	Ovary	ovary
20	chr10:97144400-97154000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:97144400-97155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:97145000-97150200	Enhancers	Stomach Mucosa	stomach
23	chr10:97145000-97151200	Weak transcription	Fetal Brain Female	brain
24	chr10:97145000-97153200	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:97145800-97150200	Enhancers	Liver	Liver
26	chr10:97146400-97152400	Enhancers	GM12878-XiMat	blood
27	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
28	chr10:97147000-97150400	Enhancers	Brain Hippocampus Middle	brain
29	chr10:97147000-97150800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:97147000-97152600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr10:97147200-97150200	Enhancers	Brain Angular Gyrus	brain
32	chr10:97147200-97150200	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr10:97147200-97152000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:97147200-97152400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:97147200-97153800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:97147200-97158800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:97147400-97150200	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr10:97147400-97150800	Enhancers	Right Atrium	heart
39	chr10:97147400-97152600	Enhancers	Brain Anterior Caudate	brain
40	chr10:97147400-97154000	Genic enhancers	Stomach Smooth Muscle	stomach
41	chr10:97147400-97154400	Genic enhancers	Left Ventricle	heart
42	chr10:97147600-97150200	Enhancers	Brain Substantia Nigra	brain
43	chr10:97147600-97153400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:97147800-97150200	Genic enhancers	Right Ventricle	heart
45	chr10:97148000-97150400	Enhancers	Rectal Smooth Muscle	rectum
46	chr10:97148000-97151600	Enhancers	Brain Cingulate Gyrus	brain
47	chr10:97148200-97150200	Genic enhancers	Fetal Stomach	stomach
48	chr10:97148200-97150600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:97148400-97154400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr10:97148600-97150600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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