Variant report

Variant	rs34206975
Chromosome Location	chr10:97104322-97104323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11545359	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12771392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12773574	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12777787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12782272	1.00[AFR][1000 genomes]
rs34235944	0.84[EUR][1000 genomes]
rs34258576	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34363946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34600466	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34969841	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35045072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35265356	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35348091	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs35561941	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35678254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35707641	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs35892931	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41315245	0.84[EUR][1000 genomes]
rs56363857	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67008126	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67201255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71482354	0.87[AMR][1000 genomes]
rs72822527	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72822553	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
4	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
6	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:97093200-97106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:97094400-97106600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97094600-97118000	Weak transcription	HSMM	muscle
10	chr10:97095000-97110600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:97096400-97108400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:97096400-97110600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:97096600-97110600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:97096800-97110600	Weak transcription	Psoas Muscle	Psoas
16	chr10:97097000-97106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:97097800-97110600	Weak transcription	Right Atrium	heart
18	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
19	chr10:97099200-97105000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:97099200-97106600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:97099200-97106600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:97099200-97106600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:97099200-97106800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:97099200-97108400	Weak transcription	Gastric	stomach
25	chr10:97099200-97110600	Weak transcription	Lung	lung
26	chr10:97099200-97110800	Weak transcription	Fetal Intestine Small	intestine
27	chr10:97099200-97113400	Weak transcription	Ovary	ovary
28	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
29	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:97099400-97104400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:97099400-97106600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:97099400-97106600	Weak transcription	Pancreas	Pancrea
33	chr10:97099400-97110000	Weak transcription	HMEC	breast
34	chr10:97099400-97110200	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:97099400-97111000	Weak transcription	Brain Substantia Nigra	brain
36	chr10:97099600-97105800	Weak transcription	GM12878-XiMat	blood
37	chr10:97100000-97106600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:97100600-97105200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:97100800-97108600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:97101000-97104800	Enhancers	HepG2	liver
41	chr10:97101200-97105200	Weak transcription	Brain Germinal Matrix	brain
42	chr10:97101200-97106600	Weak transcription	Right Ventricle	heart
43	chr10:97101200-97108400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:97101400-97105000	Weak transcription	Aorta	Aorta
45	chr10:97101400-97106600	Weak transcription	Fetal Heart	heart
46	chr10:97101600-97108600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr10:97102000-97106400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:97102000-97108400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:97102200-97104800	Weak transcription	Placenta	Placenta
50	chr10:97102200-97106400	Strong transcription	Fetal Stomach	stomach

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